Variant report

Variant	rs1288072
Chromosome Location	chr6:119773175-119773176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1032689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1288071	0.82[AFR][1000 genomes]
rs1288075	1.00[AMR][1000 genomes]
rs1288078	1.00[AMR][1000 genomes]
rs1288079	1.00[AMR][1000 genomes]
rs1288083	1.00[AMR][1000 genomes]
rs1288086	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1288088	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17081188	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17081296	1.00[AMR][1000 genomes]
rs17081364	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3851207	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7764304	1.00[AMR][1000 genomes]
rs9481944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119760600-119774800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119768200-119774000	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr6:119768200-119780400	Weak transcription	Aorta	Aorta
4	chr6:119768800-119775600	Weak transcription	Brain Anterior Caudate	brain
5	chr6:119770400-119774600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:119770400-119774800	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:119770600-119774200	Weak transcription	Spleen	Spleen
8	chr6:119770600-119774400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:119770600-119776000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:119770800-119774200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:119770800-119774400	Weak transcription	Dnd41	blood
12	chr6:119770800-119780000	Weak transcription	Gastric	stomach
13	chr6:119771400-119780000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:119772000-119774000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:119772000-119774400	Weak transcription	Primary B cells from cord blood	blood
16	chr6:119772200-119774400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:119772200-119774600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr6:119772800-119774200	Weak transcription	Fetal Brain Male	brain
19	chr6:119773000-119773200	Enhancers	H1 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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