Variant report

Variant	rs1288079
Chromosome Location	chr6:119783573-119783574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1032689	1.00[AMR][1000 genomes]
rs1288072	1.00[AMR][1000 genomes]
rs1288075	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1288078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1288083	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1288086	1.00[AMR][1000 genomes]
rs1288088	1.00[AMR][1000 genomes]
rs17081188	1.00[AMR][1000 genomes]
rs17081296	1.00[AMR][1000 genomes]
rs17081364	1.00[AMR][1000 genomes]
rs3851207	1.00[AMR][1000 genomes]
rs7764304	1.00[AMR][1000 genomes]
rs9481944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119776200-119789200	Weak transcription	Fetal Heart	heart
2	chr6:119777600-119784200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:119781600-119783600	ZNF genes & repeats	GM12878-XiMat	blood
4	chr6:119781600-119784200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:119782000-119784000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:119782800-119783600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr6:119783200-119785600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
8	chr6:119783400-119785600	Enhancers	Dnd41	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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