Variant report

Variant	rs17081296
Chromosome Location	chr6:119826285-119826286
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1032689	1.00[AMR][1000 genomes]
rs1288072	1.00[AMR][1000 genomes]
rs1288075	1.00[AMR][1000 genomes]
rs1288078	1.00[AMR][1000 genomes]
rs1288079	1.00[AMR][1000 genomes]
rs1288083	1.00[AMR][1000 genomes]
rs1288086	1.00[AMR][1000 genomes]
rs1288088	1.00[AMR][1000 genomes]
rs17081188	1.00[AMR][1000 genomes]
rs17081364	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3851207	1.00[AMR][1000 genomes]
rs7764304	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9481944	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1027904	chr6:119709488-120001986	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv533518	chr6:119712186-119998618	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3442553	chr6:119742069-120076777	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv5455	chr6:119794976-119839636	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119822000-119831400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:119825000-119826600	Enhancers	Fetal Heart	heart
3	chr6:119825600-119827000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:119825800-119833400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:119825800-119850200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:119826000-119826400	Enhancers	K562	blood
7	chr6:119826000-119827000	Enhancers	Colon Smooth Muscle	Colon
8	chr6:119826200-119826600	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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