Variant report

Variant	rs12883343
Chromosome Location	chr14:35852474-35852475
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35834445..35839728-chr14:35850287..35856081,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12433011	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883213	0.82[ASN][1000 genomes]
rs1951275	0.89[ASN][1000 genomes]
rs1951276	0.90[ASN][1000 genomes]
rs1951277	0.90[ASN][1000 genomes]
rs1951278	0.90[ASN][1000 genomes]
rs2145623	0.81[ASN][1000 genomes]
rs34150541	0.80[ASN][1000 genomes]
rs34416212	0.80[ASN][1000 genomes]
rs4460979	0.89[ASN][1000 genomes]
rs58048675	0.89[ASN][1000 genomes]
rs7146555	0.90[ASN][1000 genomes]
rs7146577	0.90[ASN][1000 genomes]
rs7152376	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
2	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35841600-35853000	Weak transcription	Right Atrium	heart
2	chr14:35844000-35852800	Weak transcription	HUVEC	blood vessel
3	chr14:35846000-35853000	Weak transcription	Lung	lung
4	chr14:35846200-35853000	Weak transcription	K562	blood
5	chr14:35847200-35853000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:35848400-35853000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:35848600-35852600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:35848600-35852800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:35848600-35853200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:35848800-35852800	Weak transcription	NHDF-Ad	bronchial
11	chr14:35848800-35853200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:35849000-35852800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:35850400-35852800	Weak transcription	Osteobl	bone
14	chr14:35850600-35852600	Weak transcription	Fetal Intestine Small	intestine
15	chr14:35850600-35852800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:35850600-35852800	Weak transcription	Adipose Nuclei	Adipose
17	chr14:35850600-35852800	Weak transcription	Colonic Mucosa	Colon
18	chr14:35850600-35852800	Weak transcription	Fetal Intestine Large	intestine
19	chr14:35850600-35853000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr14:35850800-35852600	Weak transcription	A549	lung
21	chr14:35850800-35852600	Weak transcription	Hela-S3	cervix
22	chr14:35851200-35855000	Enhancers	Placenta	Placenta
23	chr14:35852200-35855400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr14:35852400-35852600	Flanking Active TSS	Colon Smooth Muscle	Colon
25	chr14:35852400-35852600	Enhancers	Stomach Smooth Muscle	stomach
26	chr14:35852400-35853000	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr14:35852400-35853000	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr14:35852400-35854400	Enhancers	Rectal Smooth Muscle	rectum
29	chr14:35852400-35854600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr14:35852400-35855200	Enhancers	Psoas Muscle	Psoas
31	chr14:35852400-35855600	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr14:35852400-35855800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr14:35852400-35856200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr14:35852400-35856200	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links