Variant report

Variant	rs7146577
Chromosome Location	chr14:35852759-35852760
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35834445..35839728-chr14:35850287..35856081,6	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12433011	0.90[ASN][1000 genomes]
rs12883213	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12883343	0.90[ASN][1000 genomes]
rs1951275	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1951276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1951278	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34150541	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34416212	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4460979	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs58048675	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7146555	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152376	0.90[ASN][1000 genomes]
rs8010335	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
2	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35841600-35853000	Weak transcription	Right Atrium	heart
2	chr14:35844000-35852800	Weak transcription	HUVEC	blood vessel
3	chr14:35846000-35853000	Weak transcription	Lung	lung
4	chr14:35846200-35853000	Weak transcription	K562	blood
5	chr14:35847200-35853000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:35848400-35853000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:35848600-35852800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:35848600-35853200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:35848800-35852800	Weak transcription	NHDF-Ad	bronchial
10	chr14:35848800-35853200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:35849000-35852800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:35850400-35852800	Weak transcription	Osteobl	bone
13	chr14:35850600-35852800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:35850600-35852800	Weak transcription	Adipose Nuclei	Adipose
15	chr14:35850600-35852800	Weak transcription	Colonic Mucosa	Colon
16	chr14:35850600-35852800	Weak transcription	Fetal Intestine Large	intestine
17	chr14:35850600-35853000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr14:35851200-35855000	Enhancers	Placenta	Placenta
19	chr14:35852200-35855400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr14:35852400-35853000	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:35852400-35853000	Enhancers	Skeletal Muscle Female	skeletal muscle
22	chr14:35852400-35854400	Enhancers	Rectal Smooth Muscle	rectum
23	chr14:35852400-35854600	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr14:35852400-35855200	Enhancers	Psoas Muscle	Psoas
25	chr14:35852400-35855600	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr14:35852400-35855800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:35852400-35856200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:35852400-35856200	Enhancers	Fetal Muscle Leg	muscle
29	chr14:35852600-35852800	Enhancers	Colon Smooth Muscle	Colon
30	chr14:35852600-35853600	Enhancers	A549	lung
31	chr14:35852600-35854600	Enhancers	Hela-S3	cervix
32	chr14:35852600-35855400	Enhancers	Fetal Intestine Small	intestine
33	chr14:35852600-35855400	Flanking Active TSS	Stomach Smooth Muscle	stomach
34	chr14:35852600-35856400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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