Variant report

Variant	rs12892572
Chromosome Location	chr14:79229699-79229700
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10131263	1.00[YRI][hapmap]
rs10133185	1.00[YRI][hapmap]
rs10137487	1.00[YRI][hapmap]
rs12896562	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17108212	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17108215	0.80[GIH][hapmap]
rs34283104	0.94[EUR][1000 genomes]
rs34411553	0.94[EUR][1000 genomes]
rs36052103	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74064953	0.90[EUR][1000 genomes]
rs8011930	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap]
rs8012207	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs8016198	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12892572	AHSA1	cis	cerebellum	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79223200-79230400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr14:79224000-79230000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:79224800-79230000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:79224800-79230000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:79229600-79230600	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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