Variant report

Variant	rs12896562
Chromosome Location	chr14:79244443-79244444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10483920	1.00[AFR][1000 genomes]
rs12892572	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17108212	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17757990	1.00[AFR][1000 genomes]
rs17758002	1.00[AFR][1000 genomes]
rs17758014	1.00[AFR][1000 genomes]
rs34283104	0.86[EUR][1000 genomes]
rs34411553	0.86[EUR][1000 genomes]
rs34495944	1.00[AFR][1000 genomes]
rs36052103	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74064953	0.90[EUR][1000 genomes]
rs8011930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8012207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8016198	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752511	chr14:79233907-79270576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv2753664	chr14:79233907-79270576	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv431018	chr14:79233907-79270576	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links