Variant report

Variant	rs8016198
Chromosome Location	chr14:79234311-79234312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12892572	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12896562	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17108212	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34283104	0.89[EUR][1000 genomes]
rs34411553	0.89[EUR][1000 genomes]
rs36052103	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74064953	0.93[EUR][1000 genomes]
rs8011930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8012207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752511	chr14:79233907-79270576	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
2	esv2753664	chr14:79233907-79270576	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv431018	chr14:79233907-79270576	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79231400-79235400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr14:79232600-79235200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:79233400-79234400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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