Variant report

Variant	rs12894199
Chromosome Location	chr14:70913796-70913797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10133282	0.81[ASN][1000 genomes]
rs10139500	0.87[ASN][1000 genomes]
rs10142102	0.83[CHB][hapmap]
rs10144818	0.84[ASN][1000 genomes]
rs10148586	0.84[CHB][hapmap]
rs10150707	0.88[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1044527	0.82[JPT][hapmap]
rs11158861	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11623974	0.82[JPT][hapmap]
rs11844845	0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12589762	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12889741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1959485	1.00[CHB][hapmap]
rs2332384	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2877657	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs3759774	0.81[JPT][hapmap]
rs4541006	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899354	1.00[CHB][hapmap]
rs4902815	0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs58186506	0.86[ASN][1000 genomes]
rs59788049	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs61979082	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66886776	0.93[ASN][1000 genomes]
rs7141636	0.84[ASN][1000 genomes]
rs7144478	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8014179	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs8015005	0.87[JPT][hapmap]
rs9323536	0.83[CHB][hapmap]
rs9652366	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902075	chr14:70612618-70919016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70908400-70915800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr14:70908800-70921600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr14:70910600-70955600	Weak transcription	Left Ventricle	heart
4	chr14:70912000-70915400	Weak transcription	Small Intestine	intestine
5	chr14:70912800-70915400	Weak transcription	Psoas Muscle	Psoas
6	chr14:70913200-70913800	Strong transcription	Ovary	ovary
7	chr14:70913200-70914200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr14:70913200-70914200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:70913200-70921600	Weak transcription	Adipose Nuclei	Adipose
10	chr14:70913400-70914400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:70913400-70914400	Enhancers	HMEC	breast

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