Variant report
| Variant | rs61979082 |
|---|---|
| Chromosome Location | chr14:70892065-70892066 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10133282 | 0.85[ASN][1000 genomes] |
| rs10139500 | 0.90[ASN][1000 genomes] |
| rs10144818 | 0.87[ASN][1000 genomes] |
| rs10150707 | 0.87[ASN][1000 genomes] |
| rs11158861 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11844845 | 0.86[ASN][1000 genomes] |
| rs12588623 | 0.83[ASN][1000 genomes] |
| rs12589762 | 0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12889741 | 0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12894199 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2332384 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2877657 | 0.83[ASN][1000 genomes] |
| rs4541006 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4902815 | 0.92[ASN][1000 genomes] |
| rs4902821 | 0.80[AFR][1000 genomes] |
| rs55728800 | 0.83[ASN][1000 genomes] |
| rs58186506 | 0.89[ASN][1000 genomes] |
| rs59788049 | 1.00[ASN][1000 genomes] |
| rs66886776 | 0.96[ASN][1000 genomes] |
| rs7141636 | 0.87[ASN][1000 genomes] |
| rs7144478 | 0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs8014179 | 0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902075 | chr14:70612618-70919016 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv3523741 | chr14:70888699-70893997 | Weak transcription Enhancers ZNF genes & repeats | TF binding regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| 3 | esv3523752 | chr14:70890224-70892972 | Weak transcription Enhancers ZNF genes & repeats | lncRNA | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv3523763 | chr14:70890224-70892972 | Weak transcription Enhancers ZNF genes & repeats | lncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | esv3364053 | chr14:70890449-70892747 | Weak transcription ZNF genes & repeats Enhancers | lncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:70890600-70892600 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr14:70892000-70893000 | Enhancers | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
