Variant report

Variant	rs12895271
Chromosome Location	chr14:69393330-69393331
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69385464..69388113-chr14:69393207..69396129,2	K562	blood:
2	chr14:69391196..69393563-chr14:69405048..69407847,2	MCF-7	breast:
3	chr14:69393285..69394901-chr14:69397519..69399946,2	MCF-7	breast:
4	chr14:69378571..69380525-chr14:69392033..69394112,2	K562	blood:
5	chr14:69385888..69393669-chr14:69442988..69447287,14	MCF-7	breast:
6	chr14:69392677..69394471-chr14:69400892..69402453,2	MCF-7	breast:
7	chr14:69390453..69396616-chr14:69408232..69413432,8	MCF-7	breast:
8	chr14:69392307..69395175-chr14:69395494..69398200,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12897073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35090961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35586847	1.00[CEU][hapmap]
rs71423332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72718203	1.00[AFR][1000 genomes]
rs72718208	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv564964	chr14:69392264-69423164	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv456333	chr14:69392445-69415962	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv564965	chr14:69392445-69415962	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
2	chr14:69339200-69394600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:69345800-69394800	Weak transcription	Small Intestine	intestine
4	chr14:69362600-69393400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:69372400-69404400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr14:69376000-69395400	Weak transcription	Brain Angular Gyrus	brain
7	chr14:69378800-69394000	Weak transcription	Stomach Mucosa	stomach
8	chr14:69378800-69402400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:69382000-69394200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr14:69385600-69402800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr14:69387000-69395000	Weak transcription	Fetal Kidney	kidney
12	chr14:69387000-69402600	Weak transcription	K562	blood
13	chr14:69387400-69420400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:69387800-69394600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr14:69387800-69405600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr14:69389200-69394200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:69389400-69394000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:69389400-69397400	Strong transcription	Muscle Satellite Cultured Cells	--
19	chr14:69389600-69404400	Weak transcription	Psoas Muscle	Psoas
20	chr14:69390000-69397800	Weak transcription	Brain Anterior Caudate	brain
21	chr14:69390000-69402200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr14:69390000-69404400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:69390200-69394000	Weak transcription	Aorta	Aorta
24	chr14:69390200-69402400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr14:69391400-69394000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr14:69391600-69393800	ZNF genes & repeats	Spleen	Spleen
27	chr14:69391600-69394400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:69391600-69395000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr14:69391600-69396400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:69391800-69393400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr14:69391800-69394200	Weak transcription	Right Atrium	heart
32	chr14:69391800-69394800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:69391800-69395000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr14:69391800-69397800	Strong transcription	HSMM	muscle
35	chr14:69391800-69403600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
36	chr14:69392000-69393600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:69392000-69394000	Strong transcription	NH-A	brain
38	chr14:69392000-69394600	Strong transcription	Fetal Stomach	stomach
39	chr14:69392000-69394600	Strong transcription	Osteobl	bone
40	chr14:69392000-69394800	Weak transcription	Fetal Heart	heart
41	chr14:69392200-69393400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr14:69392200-69393400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr14:69392200-69393400	ZNF genes & repeats	Adipose Nuclei	Adipose
44	chr14:69392200-69393400	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
45	chr14:69392200-69393600	Strong transcription	Liver	Liver
46	chr14:69392200-69393600	ZNF genes & repeats	Fetal Thymus	thymus
47	chr14:69392200-69393800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr14:69392200-69393800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
49	chr14:69392200-69393800	ZNF genes & repeats	Thymus	Thymus
50	chr14:69392400-69393600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood

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