Variant report

Variant	rs71423332
Chromosome Location	chr14:69351064-69351065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr14:69351025-69351585	MCF10A-Er-Src	breast:	n/a	chr14:69351187-69351198
2	POLR2A	chr14:69350900-69351255	ECC-1	luminal epithelium:	n/a	n/a
3	USF1	chr14:69350970-69351526	A549	lung:	n/a	n/a
4	MAX	chr14:69350927-69351852	A549	lung:	n/a	chr14:69351187-69351198
5	FOS	chr14:69351023-69351717	MCF10A-Er-Src	breast:	n/a	chr14:69351122-69351134
6	NR3C1	chr14:69350840-69351568	A549	lung:	n/a	chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351143-69351157 chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351141-69351158
7	POLR2A	chr14:69350960-69351383	SK-N-SH	brain:	n/a	n/a
8	POLR2A	chr14:69350675-69351366	SK-N-SH	brain:	n/a	n/a
9	STAT3	chr14:69351039-69351319	MCF10A-Er-Src	breast:	n/a	n/a
10	MXI1	chr14:69350404-69351685	IMR90	lung:	n/a	n/a
11	NFIC	chr14:69350810-69351534	SK-N-SH	brain:	n/a	n/a
12	NR3C1	chr14:69350880-69351371	A549	lung:	n/a	chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351143-69351157 chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351141-69351158
13	FOS	chr14:69351020-69351728	MCF10A-Er-Src	breast:	n/a	chr14:69351122-69351134
14	NR3C1	chr14:69350924-69351403	A549	lung:	n/a	chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351143-69351157 chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351141-69351158
15	POLR2A	chr14:69350845-69353100	A549	lung:	n/a	n/a
16	POLR2A	chr14:69350983-69351383	HepG2	liver:	n/a	n/a
17	POLR2A	chr14:69350984-69351281	Hela-S3	cervix:	n/a	n/a
18	CREB1	chr14:69350931-69351624	A549	lung:	n/a	n/a
19	JUND	chr14:69350967-69351836	A549	lung:	n/a	chr14:69351576-69351587 chr14:69351122-69351134
20	FOS	chr14:69351039-69351729	MCF10A-Er-Src	breast:	n/a	chr14:69351122-69351134
21	POLR2A	chr14:69350842-69351799	U87	brain:	n/a	n/a
22	POLR2A	chr14:69351006-69351586	U87	brain:	n/a	n/a
23	SP1	chr14:69350837-69351829	A549	lung:	n/a	chr14:69350866-69350880 chr14:69351747-69351759 chr14:69351747-69351759 chr14:69351749-69351758
24	NR3C1	chr14:69351057-69351314	A549	lung:	n/a	chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351143-69351157 chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351141-69351158
25	POLR2A	chr14:69350926-69353152	IMR90	lung:	n/a	n/a
26	EP300	chr14:69351059-69351734	A549	lung:	n/a	n/a
27	NR3C1	chr14:69350869-69351497	A549	lung:	n/a	chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351143-69351157 chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351141-69351158
28	POLR2A	chr14:69350902-69351638	HUVEC	blood vessel:	n/a	n/a
29	POLR2A	chr14:69351031-69351872	HUVEC	blood vessel:	n/a	n/a
30	POLR2A	chr14:69351055-69351434	HCT-116	colon:	n/a	n/a
31	USF1	chr14:69350938-69351471	A549	lung:	n/a	n/a
32	MAX	chr14:69351006-69351690	A549	lung:	n/a	chr14:69351187-69351198
33	NR3C1	chr14:69350941-69351380	A549	lung:	n/a	chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351143-69351157 chr14:69351137-69351163 chr14:69351137-69351163 chr14:69351141-69351158
34	NFIC	chr14:69350996-69351439	ECC-1	luminal epithelium:	n/a	n/a
35	JUND	chr14:69350915-69351782	A549	lung:	n/a	chr14:69351576-69351587 chr14:69351122-69351134
36	FOSL2	chr14:69350740-69352016	A549	lung:	n/a	chr14:69351575-69351586 chr14:69351122-69351134
37	FOSL2	chr14:69350892-69351745	SK-N-SH	brain:	n/a	chr14:69351575-69351586 chr14:69351122-69351134
38	TCF12	chr14:69350812-69351814	A549	lung:	n/a	chr14:69351159-69351166
39	FOS	chr14:69351022-69351738	MCF10A-Er-Src	breast:	n/a	chr14:69351122-69351134
40	POLR2A	chr14:69350757-69351246	PANC-1	pancreas:	n/a	n/a
41	USF1	chr14:69350936-69351492	A549	lung:	n/a	n/a
42	MYC	chr14:69351047-69351486	MCF10A-Er-Src	breast:	n/a	chr14:69351187-69351198
43	SP1	chr14:69350948-69351808	A549	lung:	n/a	chr14:69351747-69351759 chr14:69351747-69351759 chr14:69351749-69351758
44	E2F4	chr14:69350892-69351092	MCF10A-Er-Src	breast:	n/a	n/a
45	POLR2A	chr14:69351056-69353154	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69344263..69347194-chr14:69349604..69352915,4	MCF-7	breast:
2	chr14:69347920..69352793-chr14:69354599..69357859,5	MCF-7	breast:

Variant related genes	Relation type
ACTN1	TF binding region
ENSG00000258967	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12895271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12897073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902074	chr14:69339691-69360631	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69336200-69351200	Strong transcription	HSMM	muscle
2	chr14:69336400-69358800	Strong transcription	HSMMtube	muscle
3	chr14:69336400-69364200	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr14:69336400-69378200	Strong transcription	Primary T cells from cord blood	blood
5	chr14:69336600-69358600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:69336800-69360400	Weak transcription	Right Atrium	heart
7	chr14:69337400-69351400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr14:69337400-69353000	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr14:69337400-69404400	Weak transcription	Fetal Brain Male	brain
10	chr14:69337600-69351200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:69337600-69353000	Strong transcription	Aorta	Aorta
12	chr14:69337600-69361200	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr14:69337800-69352600	Strong transcription	Fetal Lung	lung
14	chr14:69337800-69353000	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr14:69337800-69353000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
16	chr14:69337800-69379200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:69337800-69380600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
18	chr14:69338000-69352600	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr14:69338000-69352600	Strong transcription	Brain Anterior Caudate	brain
20	chr14:69338000-69353000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:69338000-69353000	Strong transcription	Gastric	stomach
22	chr14:69338000-69353200	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr14:69338000-69355800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:69338000-69365400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr14:69338000-69366200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:69338000-69378800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:69338200-69351400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:69338200-69352800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr14:69338200-69353000	Strong transcription	Spleen	Spleen
30	chr14:69338200-69354000	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:69338200-69361400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:69338200-69361600	Strong transcription	Ovary	ovary
33	chr14:69338200-69361800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr14:69338200-69362200	Strong transcription	Fetal Muscle Leg	muscle
35	chr14:69338200-69362800	Strong transcription	Placenta	Placenta
36	chr14:69338200-69365000	Strong transcription	Pancreas	Pancrea
37	chr14:69338200-69365600	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr14:69338200-69375000	Strong transcription	Placenta Amnion	Placenta Amnion
39	chr14:69338200-69378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr14:69338400-69353000	Strong transcription	Sigmoid Colon	Sigmoid Colon
41	chr14:69338400-69353200	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr14:69338400-69360600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr14:69338400-69377800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr14:69338600-69353000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr14:69338600-69370600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:69339200-69394600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr14:69339600-69360800	Strong transcription	Fetal Stomach	stomach
48	chr14:69339800-69351200	Strong transcription	Right Ventricle	heart
49	chr14:69340800-69366800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr14:69341200-69351200	Strong transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links