Variant report

Variant	rs12897073
Chromosome Location	chr14:69471445-69471446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69443805..69447770-chr14:69468960..69472482,4	MCF-7	breast:
2	chr14:69469601..69471600-chr14:69472625..69475481,2	K562	blood:
3	chr14:69390106..69392207-chr14:69470641..69472372,2	MCF-7	breast:
4	chr14:69468155..69470465-chr14:69471186..69473810,2	MCF-7	breast:
5	chr14:69463487..69465759-chr14:69469835..69471867,2	MCF-7	breast:
6	chr14:69458865..69460380-chr14:69470355..69472352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000072110	Chromatin interaction
ENSG00000259062	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12895271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35090961	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35108730	1.00[AMR][1000 genomes]
rs71423332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69465000-69471600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:69469000-69472000	Weak transcription	Placenta	Placenta
3	chr14:69469200-69471600	Weak transcription	A549	lung
4	chr14:69469800-69473000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:69470800-69473000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:69470800-69473200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr14:69471000-69471600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:69471000-69472800	Enhancers	Placenta Amnion	Placenta Amnion
9	chr14:69471000-69473200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr14:69471000-69473400	Enhancers	Fetal Muscle Trunk	muscle
11	chr14:69471000-69473600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:69471200-69471600	Enhancers	NH-A	brain
13	chr14:69471200-69472000	Enhancers	HMEC	breast
14	chr14:69471200-69472800	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr14:69471200-69473000	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr14:69471200-69473000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr14:69471200-69473000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:69471200-69473000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:69471200-69473000	Enhancers	Stomach Smooth Muscle	stomach
20	chr14:69471200-69473000	Enhancers	NHLF	lung
21	chr14:69471200-69473200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:69471200-69473200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:69471200-69473200	Enhancers	NHDF-Ad	bronchial
24	chr14:69471200-69473800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:69471200-69473800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:69471400-69471600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr14:69471400-69472000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:69471400-69472400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr14:69471400-69472400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:69471400-69472800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr14:69471400-69472800	Enhancers	Esophagus	oesophagus
32	chr14:69471400-69472800	Enhancers	Fetal Muscle Leg	muscle
33	chr14:69471400-69473000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:69471400-69473200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:69471400-69473200	Enhancers	Aorta	Aorta
36	chr14:69471400-69473200	Enhancers	HUVEC	blood vessel

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