Variant report

Variant	rs12902516
Chromosome Location	chr15:58750132-58750133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1968686	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv904267	chr15:58699010-58769583	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1047048	chr15:58701400-58784800	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1043362	chr15:58726337-58756571	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv457173	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv569600	chr15:58731567-58779039	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58737400-58761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:58743800-58770400	Enhancers	Fetal Thymus	thymus
3	chr15:58744200-58751800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:58745200-58751400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:58747000-58751400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:58747000-58752600	Weak transcription	Right Ventricle	heart
7	chr15:58747600-58750800	Weak transcription	Brain Substantia Nigra	brain
8	chr15:58747600-58754800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr15:58747800-58750600	Weak transcription	Brain Hippocampus Middle	brain
10	chr15:58747800-58754400	Weak transcription	Brain Anterior Caudate	brain
11	chr15:58748200-58754000	Enhancers	Spleen	Spleen
12	chr15:58748400-58755000	Weak transcription	Gastric	stomach
13	chr15:58749000-58753400	Enhancers	Fetal Muscle Leg	muscle
14	chr15:58749400-58750600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:58749400-58752000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:58749400-58752000	Enhancers	NHLF	lung
17	chr15:58749400-58752800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:58749400-58753000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:58749400-58753400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr15:58749600-58750200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:58749600-58750200	Enhancers	Lung	lung
22	chr15:58749600-58750200	Enhancers	Right Atrium	heart
23	chr15:58749600-58750400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr15:58749600-58750400	Enhancers	Left Ventricle	heart
25	chr15:58749600-58750600	Enhancers	NH-A	brain
26	chr15:58749600-58750600	Enhancers	Osteobl	bone
27	chr15:58749600-58750800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:58749600-58751000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:58749600-58751000	Enhancers	NHEK	skin
30	chr15:58749600-58751400	Enhancers	HMEC	breast
31	chr15:58749600-58751600	Enhancers	Monocytes-CD14+_RO01746	blood
32	chr15:58749600-58752000	Enhancers	NHDF-Ad	bronchial
33	chr15:58749600-58752200	Enhancers	Liver	Liver
34	chr15:58749600-58752200	Enhancers	K562	blood
35	chr15:58749600-58752400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr15:58749600-58752400	Enhancers	Small Intestine	intestine
37	chr15:58749600-58752600	Enhancers	Duodenum Mucosa	Duodenum
38	chr15:58749600-58752800	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr15:58749600-58752800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr15:58749600-58752800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:58749600-58752800	Enhancers	Muscle Satellite Cultured Cells	--
42	chr15:58749600-58752800	Enhancers	Fetal Intestine Small	intestine
43	chr15:58749600-58752800	Enhancers	A549	lung
44	chr15:58749600-58752800	Enhancers	HUVEC	blood vessel
45	chr15:58749600-58753000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr15:58749600-58753000	Enhancers	HSMMtube	muscle
47	chr15:58749600-58753200	Enhancers	Sigmoid Colon	Sigmoid Colon
48	chr15:58749600-58753400	Enhancers	Primary hematopoietic stem cells short term culture	blood
49	chr15:58749600-58753400	Enhancers	Rectal Mucosa Donor 31	rectum
50	chr15:58749600-58753800	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links