Variant report

Variant	rs12906515
Chromosome Location	chr15:92527530-92527531
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10444871	1.00[JPT][hapmap]
rs4244911	1.00[JPT][hapmap]
rs4932518	1.00[JPT][hapmap]
rs6496880	1.00[JPT][hapmap]
rs7163871	1.00[JPT][hapmap]
rs7164216	1.00[JPT][hapmap]
rs8027634	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs8028706	1.00[JPT][hapmap]
rs8032981	1.00[JPT][hapmap]
rs8037251	1.00[JPT][hapmap]
rs8037463	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92519000-92529000	Weak transcription	Brain Angular Gyrus	brain
3	chr15:92524000-92529200	Enhancers	Fetal Heart	heart
4	chr15:92524200-92528200	Weak transcription	Brain Anterior Caudate	brain
5	chr15:92524400-92528400	Weak transcription	Brain Substantia Nigra	brain
6	chr15:92524400-92533600	Weak transcription	Psoas Muscle	Psoas
7	chr15:92524600-92528400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:92524600-92528600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:92524600-92533200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:92524600-92534000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr15:92526200-92528600	Weak transcription	Left Ventricle	heart
12	chr15:92526200-92529000	Weak transcription	Esophagus	oesophagus
13	chr15:92526200-92529000	Weak transcription	Lung	lung
14	chr15:92526200-92533400	Weak transcription	HSMMtube	muscle
15	chr15:92526200-92544000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:92526400-92535600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:92526400-92535800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:92526600-92528600	Weak transcription	HMEC	breast
19	chr15:92526800-92527600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
20	chr15:92527200-92527800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr15:92527400-92528200	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:92527400-92528600	Weak transcription	Right Atrium	heart
23	chr15:92527400-92528600	Weak transcription	Right Ventricle	heart
24	chr15:92527400-92528800	Weak transcription	Spleen	Spleen
25	chr15:92527400-92532200	Weak transcription	Ovary	ovary
26	chr15:92527400-92551400	Weak transcription	Aorta	Aorta

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