Variant report

Variant	rs7163871
Chromosome Location	chr15:92487150-92487151
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:
2	chr15:92484652..92487230-chr15:92487270..92491872,4	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10444871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12901800	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12906515	1.00[JPT][hapmap]
rs4244911	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398089	0.88[ASN][1000 genomes]
rs4420511	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4932515	0.83[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4932518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6496874	0.81[CEU][hapmap]
rs6496875	0.81[CEU][hapmap]
rs6496877	1.00[CEU][hapmap];0.85[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6496878	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6496880	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7163369	1.00[JPT][hapmap]
rs7164216	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7179389	0.81[CEU][hapmap]
rs7179615	0.88[ASN][1000 genomes]
rs7179786	0.88[ASN][1000 genomes]
rs8027634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8028706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031009	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8037463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040407	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92478800-92488000	Enhancers	Fetal Heart	heart
2	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:92481800-92492600	Enhancers	Right Ventricle	heart
4	chr15:92482000-92488200	Enhancers	Left Ventricle	heart
5	chr15:92482200-92487200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr15:92482200-92492400	Enhancers	Brain Substantia Nigra	brain
7	chr15:92482600-92488000	Enhancers	Ovary	ovary
8	chr15:92482600-92488000	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr15:92482600-92491800	Enhancers	Placenta	Placenta
10	chr15:92482800-92488200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:92483000-92487200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:92483000-92487800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr15:92483200-92487200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr15:92483200-92488200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr15:92483400-92487400	Enhancers	Fetal Intestine Large	intestine
16	chr15:92483400-92487600	Enhancers	Stomach Mucosa	stomach
17	chr15:92483400-92488000	Enhancers	Fetal Intestine Small	intestine
18	chr15:92484000-92487200	Flanking Active TSS	Hela-S3	cervix
19	chr15:92484400-92487600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr15:92484800-92487400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr15:92484800-92490000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:92484800-92490400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr15:92484800-92490400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr15:92485000-92488200	Enhancers	Brain Angular Gyrus	brain
25	chr15:92485000-92492000	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr15:92485200-92487200	Enhancers	Primary hematopoietic stem cells	blood
27	chr15:92485200-92490000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:92485200-92490400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:92485200-92493800	Enhancers	Esophagus	oesophagus
30	chr15:92485400-92488000	Enhancers	Fetal Lung	lung
31	chr15:92485400-92488200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr15:92485600-92487200	Enhancers	Liver	Liver
33	chr15:92485600-92487200	Enhancers	Fetal Thymus	thymus
34	chr15:92485600-92487400	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr15:92485600-92487800	Enhancers	Spleen	Spleen
36	chr15:92485600-92488000	Enhancers	Psoas Muscle	Psoas
37	chr15:92485600-92488200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr15:92485800-92487200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
39	chr15:92485800-92487200	Enhancers	Fetal Brain Male	brain
40	chr15:92486000-92487200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr15:92486000-92487200	Flanking Active TSS	Stomach Smooth Muscle	stomach
42	chr15:92486000-92488000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:92486000-92488000	Enhancers	HSMMtube	muscle
44	chr15:92486000-92489200	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr15:92486000-92490200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:92486200-92487800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
47	chr15:92486200-92487800	Enhancers	Fetal Muscle Leg	muscle
48	chr15:92486200-92489400	Weak transcription	Gastric	stomach
49	chr15:92486400-92487200	Enhancers	Primary T cells fromperipheralblood	blood
50	chr15:92486400-92487200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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