Variant report

Variant	rs4420511
Chromosome Location	chr15:92487978-92487979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92486176..92494051-chr15:92494562..92499303,11	MCF-7	breast:
2	chr15:92484652..92487230-chr15:92487270..92491872,4	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10444871	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12901800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4244911	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4398089	0.88[ASN][1000 genomes]
rs4932515	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4932518	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6496877	0.84[EUR][1000 genomes]
rs6496878	0.84[EUR][1000 genomes]
rs6496880	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7163871	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164216	0.88[ASN][1000 genomes]
rs7179615	0.88[ASN][1000 genomes]
rs7179786	0.88[ASN][1000 genomes]
rs8027634	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs8028706	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8031009	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8032981	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8037251	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8037463	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040407	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92478800-92488000	Enhancers	Fetal Heart	heart
2	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr15:92481800-92492600	Enhancers	Right Ventricle	heart
4	chr15:92482000-92488200	Enhancers	Left Ventricle	heart
5	chr15:92482200-92492400	Enhancers	Brain Substantia Nigra	brain
6	chr15:92482600-92488000	Enhancers	Ovary	ovary
7	chr15:92482600-92488000	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr15:92482600-92491800	Enhancers	Placenta	Placenta
9	chr15:92482800-92488200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:92483200-92488200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:92483400-92488000	Enhancers	Fetal Intestine Small	intestine
12	chr15:92484800-92490000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:92484800-92490400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:92484800-92490400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:92485000-92488200	Enhancers	Brain Angular Gyrus	brain
16	chr15:92485000-92492000	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr15:92485200-92490000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr15:92485200-92490400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:92485200-92493800	Enhancers	Esophagus	oesophagus
20	chr15:92485400-92488000	Enhancers	Fetal Lung	lung
21	chr15:92485400-92488200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr15:92485600-92488000	Enhancers	Psoas Muscle	Psoas
23	chr15:92485600-92488200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr15:92486000-92488000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:92486000-92488000	Enhancers	HSMMtube	muscle
26	chr15:92486000-92489200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:92486000-92490200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:92486200-92489400	Weak transcription	Gastric	stomach
29	chr15:92486400-92488000	Enhancers	Adipose Nuclei	Adipose
30	chr15:92486400-92488200	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr15:92486400-92488200	Enhancers	Brain Hippocampus Middle	brain
32	chr15:92486400-92488200	Enhancers	Right Atrium	heart
33	chr15:92486400-92488200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr15:92486400-92488400	Enhancers	Brain Anterior Caudate	brain
35	chr15:92486400-92490200	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr15:92486400-92490400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr15:92486400-92490400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr15:92486600-92488000	Enhancers	Rectal Mucosa Donor 29	rectum
39	chr15:92486600-92488000	Enhancers	NHEK	skin
40	chr15:92486600-92488200	Enhancers	Brain Cingulate Gyrus	brain
41	chr15:92486600-92489800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr15:92486600-92491400	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr15:92486800-92488000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr15:92486800-92488000	Enhancers	Pancreas	Pancrea
45	chr15:92486800-92488000	Enhancers	HMEC	breast
46	chr15:92486800-92488000	Enhancers	NHLF	lung
47	chr15:92486800-92488200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr15:92486800-92488200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr15:92486800-92488200	Enhancers	A549	lung
50	chr15:92486800-92488200	Enhancers	NHDF-Ad	bronchial

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