Variant report

Variant	rs8027634
Chromosome Location	chr15:92482823-92482824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92474072..92476902-chr15:92480050..92482892,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10444871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12901800	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12906515	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs4244911	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4420511	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4932515	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4932518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6496877	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6496878	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6496880	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7163871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7164216	1.00[JPT][hapmap]
rs8028706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8031009	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8032981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs8037251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037463	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92464600-92483000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr15:92469400-92483000	Weak transcription	Gastric	stomach
3	chr15:92469400-92485800	Weak transcription	Aorta	Aorta
4	chr15:92470400-92483200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr15:92471200-92483600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr15:92473600-92483200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:92475400-92483000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr15:92475400-92483000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:92475400-92484600	Weak transcription	Primary T cells from cord blood	blood
10	chr15:92477400-92483400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:92477800-92483200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:92478800-92488000	Enhancers	Fetal Heart	heart
13	chr15:92479000-92483000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:92479000-92483400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr15:92479000-92491200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr15:92479200-92483000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:92479200-92483200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr15:92479200-92483400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr15:92479200-92485000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr15:92479400-92485000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr15:92479600-92483200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr15:92479800-92486000	Enhancers	Brain Hippocampus Middle	brain
23	chr15:92480200-92483000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:92480200-92483000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr15:92480200-92485000	Weak transcription	NHLF	lung
26	chr15:92480400-92483200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr15:92480600-92483000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr15:92480600-92483000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:92480600-92483200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:92480600-92483200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:92480600-92483400	Weak transcription	Stomach Mucosa	stomach
32	chr15:92480600-92485000	Weak transcription	Adipose Nuclei	Adipose
33	chr15:92480600-92485600	Weak transcription	Fetal Brain Female	brain
34	chr15:92480600-92485600	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr15:92480600-92485600	Weak transcription	Psoas Muscle	Psoas
36	chr15:92480600-92486000	Weak transcription	HSMMtube	muscle
37	chr15:92480800-92485000	Weak transcription	Fetal Muscle Leg	muscle
38	chr15:92480800-92485800	Weak transcription	Fetal Brain Male	brain
39	chr15:92481200-92484200	Enhancers	Brain Angular Gyrus	brain
40	chr15:92481400-92483800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:92481800-92483600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr15:92481800-92485000	Weak transcription	Primary neutrophils fromperipheralblood	blood
43	chr15:92481800-92486000	Enhancers	Right Atrium	heart
44	chr15:92481800-92492600	Enhancers	Right Ventricle	heart
45	chr15:92482000-92483000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:92482000-92488200	Enhancers	Left Ventricle	heart
47	chr15:92482200-92483000	Enhancers	Small Intestine	intestine
48	chr15:92482200-92483600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr15:92482200-92485400	Enhancers	Monocytes-CD14+_RO01746	blood
50	chr15:92482200-92486400	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links