Variant report

Variant	rs12907609
Chromosome Location	chr15:74266426-74266427
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74265716..74267266-chr15:74269225..74271894,2	MCF-7	breast:
2	chr15:74264224..74266446-chr15:74328782..74330811,3	MCF-7	breast:
3	chr15:74247792..74250200-chr15:74264294..74267250,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10152126	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs10152898	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10152975	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1078555	0.87[ASN][1000 genomes]
rs11072453	0.92[EUR][1000 genomes]
rs11072455	0.86[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11072456	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11072457	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11630778	0.93[EUR][1000 genomes]
rs11636435	0.92[EUR][1000 genomes]
rs11637420	0.92[ASN][1000 genomes]
rs11854876	0.89[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs11858082	0.92[EUR][1000 genomes]
rs11858669	0.85[ASN][1000 genomes]
rs12050565	0.91[EUR][1000 genomes]
rs12102019	0.92[EUR][1000 genomes]
rs12898704	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12901885	0.92[ASN][1000 genomes]
rs12906079	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12907105	0.92[EUR][1000 genomes]
rs12907194	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12917449	0.85[ASN][1000 genomes]
rs1550434	0.87[ASN][1000 genomes]
rs28405144	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28642047	0.92[EUR][1000 genomes]
rs34080912	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9630437	0.97[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74265600-74267200	Weak transcription	Primary T cells from cord blood	blood
2	chr15:74265800-74266800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:74265800-74266800	Weak transcription	GM12878-XiMat	blood
4	chr15:74265800-74267000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:74265800-74267000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:74265800-74267000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:74265800-74267000	Weak transcription	Fetal Thymus	thymus
8	chr15:74265800-74267200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:74265800-74267200	Weak transcription	Thymus	Thymus
10	chr15:74265800-74267400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr15:74265800-74267800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:74265800-74267800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:74265800-74268200	Weak transcription	NHEK	skin
14	chr15:74265800-74268200	Weak transcription	NHLF	lung
15	chr15:74265800-74271600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:74265800-74272600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:74265800-74273800	Weak transcription	Spleen	Spleen
18	chr15:74265800-74273800	Weak transcription	HMEC	breast
19	chr15:74265800-74274000	Weak transcription	Right Ventricle	heart
20	chr15:74265800-74274200	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr15:74265800-74275800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:74266000-74267000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr15:74266000-74267400	Weak transcription	Dnd41	blood
24	chr15:74266000-74268200	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr15:74266000-74273000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr15:74266200-74266600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr15:74266400-74268400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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