Variant report

Variant	rs28405144
Chromosome Location	chr15:74258992-74258993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74226747..74228446-chr15:74257644..74259264,2	MCF-7	breast:
2	chr15:74246924..74252106-chr15:74256220..74259297,4	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10152126	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10152898	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10152975	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1078555	0.83[ASN][1000 genomes]
rs11072453	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11072455	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11072456	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072457	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11630778	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11636435	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11637420	0.88[ASN][1000 genomes]
rs11854876	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11858082	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11858669	0.81[ASN][1000 genomes]
rs12050565	0.94[EUR][1000 genomes]
rs12102019	0.95[EUR][1000 genomes]
rs12898704	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12901885	0.88[ASN][1000 genomes]
rs12906079	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12907105	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12907194	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12907609	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12917449	0.81[ASN][1000 genomes]
rs1550434	0.83[ASN][1000 genomes]
rs28642047	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34080912	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9630437	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74255800-74260600	Weak transcription	HUVEC	blood vessel
2	chr15:74256400-74259400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:74256600-74259400	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr15:74256600-74259800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:74257000-74259200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr15:74257200-74259000	Enhancers	Primary B cells from cord blood	blood
7	chr15:74257200-74259200	Enhancers	Primary hematopoietic stem cells	blood
8	chr15:74257200-74259200	Enhancers	Stomach Mucosa	stomach
9	chr15:74257200-74259400	Enhancers	HMEC	breast
10	chr15:74257200-74259400	Enhancers	NH-A	brain
11	chr15:74257400-74259000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr15:74257400-74259200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr15:74257400-74259200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr15:74257400-74259400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr15:74257400-74259400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr15:74257400-74259400	Enhancers	HSMMtube	muscle
17	chr15:74257400-74259400	Enhancers	NHDF-Ad	bronchial
18	chr15:74257400-74259600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr15:74257600-74259000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr15:74257600-74259200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:74257600-74259400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:74257600-74259400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:74257800-74259200	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr15:74257800-74259200	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr15:74257800-74259200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:74257800-74259200	Enhancers	HSMM	muscle
27	chr15:74257800-74259400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:74257800-74259400	Enhancers	Duodenum Mucosa	Duodenum
29	chr15:74257800-74259600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr15:74257800-74259800	Enhancers	Primary T cells fromperipheralblood	blood
31	chr15:74257800-74260800	Enhancers	Fetal Thymus	thymus
32	chr15:74257800-74264400	Weak transcription	Placenta	Placenta
33	chr15:74257800-74265200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:74257800-74265200	Weak transcription	Gastric	stomach
35	chr15:74257800-74265200	Weak transcription	Right Atrium	heart
36	chr15:74258000-74259000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr15:74258000-74259000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:74258000-74259000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:74258000-74259200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:74258000-74259400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:74258000-74260600	Enhancers	Dnd41	blood
42	chr15:74258000-74265200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr15:74258200-74259400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr15:74258200-74259400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:74258200-74259600	Enhancers	Primary B cells from peripheral blood	blood
46	chr15:74258200-74260600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr15:74258400-74259000	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:74258400-74259000	Enhancers	Monocytes-CD14+_RO01746	blood
49	chr15:74258400-74259400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr15:74258400-74259400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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