Variant report

Variant	rs28642047
Chromosome Location	chr15:74248864-74248865
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74246776..74249194-chr15:74282787..74284549,2	MCF-7	breast:
2	chr15:74245232..74249723-chr15:74250188..74253151,4	MCF-7	breast:
3	chr15:74246949..74249867-chr9:78812472..78814448,2	MCF-7	breast:
4	chr15:74247792..74250200-chr15:74264294..74267250,2	MCF-7	breast:
5	chr15:74220226..74225417-chr15:74246567..74250999,6	MCF-7	breast:
6	chr15:74243548..74247023-chr15:74247125..74250024,4	MCF-7	breast:
7	chr15:74218615..74221246-chr15:74246155..74249253,4	MCF-7	breast:
8	chr15:74246924..74252106-chr15:74256220..74259297,4	MCF-7	breast:
9	chr15:74226756..74229357-chr15:74247800..74251030,3	MCF-7	breast:
10	chr15:74234590..74236876-chr15:74248649..74250565,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000067221	Chromatin interaction
ENSG00000129038	Chromatin interaction
ENSG00000261801	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10152126	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10152898	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10152975	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11072453	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072455	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11072456	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11072457	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11630778	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11636435	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11854876	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11858082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050565	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12102019	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12898704	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12906079	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12907105	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12907194	0.91[EUR][1000 genomes]
rs12907609	0.92[EUR][1000 genomes]
rs28405144	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34080912	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9630437	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74234800-74249400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:74242800-74251200	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr15:74243000-74249000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:74244000-74249800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:74244000-74250800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:74244000-74251000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:74244200-74249000	Weak transcription	Esophagus	oesophagus
8	chr15:74244400-74250200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:74245000-74250000	Enhancers	Spleen	Spleen
10	chr15:74245000-74251200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:74245200-74249000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:74245200-74249200	Weak transcription	Pancreas	Pancrea
13	chr15:74245400-74249800	Weak transcription	Gastric	stomach
14	chr15:74245400-74257400	Weak transcription	Fetal Lung	lung
15	chr15:74246000-74249000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr15:74246000-74249200	Weak transcription	Aorta	Aorta
17	chr15:74246000-74250200	Enhancers	Stomach Mucosa	stomach
18	chr15:74246000-74252400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:74246200-74249000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:74246200-74250000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
21	chr15:74246800-74250000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:74247000-74250600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:74247600-74249400	Enhancers	HSMM	muscle
24	chr15:74247800-74249200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr15:74247800-74250600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:74247800-74250600	Enhancers	NHLF	lung
27	chr15:74247800-74253000	Enhancers	Primary hematopoietic stem cells	blood
28	chr15:74248000-74249400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
29	chr15:74248000-74249600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:74248000-74250000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr15:74248000-74250400	Enhancers	NHDF-Ad	bronchial
32	chr15:74248000-74251800	Enhancers	Osteobl	bone
33	chr15:74248000-74252400	Enhancers	NH-A	brain
34	chr15:74248200-74249800	Enhancers	HUVEC	blood vessel
35	chr15:74248200-74249800	Enhancers	NHEK	skin
36	chr15:74248200-74250000	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr15:74248200-74250400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr15:74248200-74252600	Enhancers	HSMMtube	muscle
39	chr15:74248200-74254200	Enhancers	Fetal Thymus	thymus
40	chr15:74248200-74257200	Weak transcription	Right Ventricle	heart
41	chr15:74248400-74249200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
42	chr15:74248400-74249400	Enhancers	Adipose Nuclei	Adipose
43	chr15:74248400-74249600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:74248400-74250000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr15:74248400-74250200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:74248400-74250200	Flanking Active TSS	Hela-S3	cervix
47	chr15:74248400-74253800	Enhancers	Thymus	Thymus
48	chr15:74248600-74249800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr15:74248600-74250000	Enhancers	Placenta	Placenta
50	chr15:74248600-74250400	Enhancers	Fetal Muscle Leg	muscle

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