Variant report

Variant	rs12908754
Chromosome Location	chr15:92406510-92406511
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92396719..92399143-chr15:92405542..92407526,2	K562	blood:
2	chr15:92405637..92408201-chr15:92457507..92459937,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11857939	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12441717	0.95[EUR][1000 genomes]
rs12592577	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12905016	1.00[ASN][1000 genomes]
rs13379800	1.00[ASN][1000 genomes]
rs34252225	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4417531	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537992	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7165254	1.00[ASN][1000 genomes]
rs7165398	0.91[CEU][hapmap]
rs7166146	0.89[EUR][1000 genomes]
rs8025038	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92398000-92408000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:92398000-92408400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr15:92398000-92408800	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:92398000-92410000	Weak transcription	Gastric	stomach
5	chr15:92398800-92413400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr15:92399000-92407200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:92399400-92408200	Weak transcription	A549	lung
8	chr15:92399400-92408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr15:92399800-92410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:92400000-92408000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:92400000-92408400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:92400000-92408800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr15:92400000-92410200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:92400000-92410200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:92400000-92410200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:92400200-92409400	Weak transcription	Colonic Mucosa	Colon
17	chr15:92400200-92409400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr15:92400400-92410000	Enhancers	Brain Hippocampus Middle	brain
19	chr15:92400600-92407200	Weak transcription	Aorta	Aorta
20	chr15:92400800-92409400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:92401000-92410800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr15:92401000-92412200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr15:92401000-92412200	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr15:92401000-92415400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:92401200-92406800	Weak transcription	Small Intestine	intestine
26	chr15:92401200-92415000	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr15:92401600-92408200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr15:92402400-92408000	Weak transcription	Ovary	ovary
29	chr15:92402600-92411200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr15:92403000-92413200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:92403200-92408400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:92403200-92413400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr15:92403600-92406600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr15:92403600-92409000	Weak transcription	Osteobl	bone
35	chr15:92404000-92408000	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:92404000-92408200	Weak transcription	HMEC	breast
37	chr15:92404400-92411800	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr15:92404600-92406600	Weak transcription	Adipose Nuclei	Adipose
40	chr15:92404600-92408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:92404600-92408000	Weak transcription	Lung	lung
42	chr15:92404800-92407000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:92405000-92406600	Weak transcription	Fetal Thymus	thymus
44	chr15:92405000-92407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:92405000-92407200	Weak transcription	Spleen	Spleen
46	chr15:92405000-92407400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:92405000-92412200	Enhancers	Primary T helper naive cells from peripheral blood	blood
48	chr15:92405200-92407200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr15:92405200-92408400	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr15:92405200-92411200	Enhancers	Monocytes-CD14+_RO01746	blood

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