Variant report

Variant	rs34252225
Chromosome Location	chr15:92410259-92410260
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:92409282..92412170-chr15:92413034..92414861,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11857939	1.00[ASN][1000 genomes]
rs12441717	0.94[EUR][1000 genomes]
rs12592577	1.00[ASN][1000 genomes]
rs12905016	1.00[ASN][1000 genomes]
rs12908754	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379800	1.00[ASN][1000 genomes]
rs4417531	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4537992	1.00[ASN][1000 genomes]
rs7165254	1.00[ASN][1000 genomes]
rs7166146	0.90[EUR][1000 genomes]
rs8025038	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92398800-92413400	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:92399800-92410600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:92401000-92410800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr15:92401000-92412200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92401000-92412200	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr15:92401000-92415400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr15:92401200-92415000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr15:92402600-92411200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr15:92403000-92413200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr15:92403200-92413400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr15:92404400-92411800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr15:92404400-92433600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr15:92405000-92412200	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr15:92405200-92411200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr15:92405200-92413400	Enhancers	Left Ventricle	heart
16	chr15:92405600-92411400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:92405600-92412000	Enhancers	Brain Cingulate Gyrus	brain
18	chr15:92405800-92411400	Enhancers	Brain Angular Gyrus	brain
19	chr15:92406400-92411200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr15:92406400-92411400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr15:92406400-92412200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:92406400-92413200	Enhancers	Fetal Brain Male	brain
23	chr15:92406400-92413200	Enhancers	Right Atrium	heart
24	chr15:92406400-92413400	Enhancers	Right Ventricle	heart
25	chr15:92406600-92410600	Enhancers	Psoas Muscle	Psoas
26	chr15:92406600-92412000	Enhancers	Fetal Thymus	thymus
27	chr15:92406800-92410400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr15:92407200-92411200	Enhancers	Spleen	Spleen
29	chr15:92407200-92411400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:92407400-92411600	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr15:92408000-92410800	Enhancers	HSMMtube	muscle
32	chr15:92408000-92411200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr15:92408000-92411600	Enhancers	Ovary	ovary
34	chr15:92408000-92412000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:92408000-92412000	Enhancers	Lung	lung
36	chr15:92408400-92411400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr15:92408400-92411800	Enhancers	Stomach Mucosa	stomach
38	chr15:92408400-92412000	Enhancers	Fetal Heart	heart
39	chr15:92408400-92414800	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr15:92408800-92410400	Enhancers	Small Intestine	intestine
41	chr15:92408800-92410600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:92408800-92411000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:92408800-92411000	Enhancers	NHDF-Ad	bronchial
44	chr15:92408800-92411200	Enhancers	Fetal Brain Female	brain
45	chr15:92408800-92411400	Enhancers	Fetal Stomach	stomach
46	chr15:92408800-92412000	Enhancers	Dnd41	blood
47	chr15:92409000-92410400	Enhancers	Osteobl	bone
48	chr15:92409200-92410400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:92409200-92410600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr15:92409200-92410800	Enhancers	Duodenum Smooth Muscle	Duodenum

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