Variant report

Variant	rs12909723
Chromosome Location	chr15:76371733-76371734
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12904578	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12911337	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17429587	0.91[CEU][hapmap]
rs2133097	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2955734	0.90[EUR][1000 genomes]
rs2959835	0.87[EUR][1000 genomes]
rs2959836	0.82[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959838	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2959843	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs35683640	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35743198	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35783418	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62027652	0.81[EUR][1000 genomes]
rs66529364	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736806	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8040025	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv833057	chr15:76367848-76585868	ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76367000-76371800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr15:76367200-76376600	Weak transcription	Right Atrium	heart
3	chr15:76368600-76380600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:76370600-76371800	Enhancers	Primary hematopoietic stem cells	blood
5	chr15:76371200-76379800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:76371400-76374000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:76371400-76374800	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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