Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12904578	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12909723	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1499063	0.82[ASW][hapmap]
rs17427842	0.82[ASW][hapmap]
rs17429587	0.91[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs2133097	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2441930	0.82[ASW][hapmap]
rs2955734	0.90[EUR][1000 genomes]
rs2959835	0.87[EUR][1000 genomes]
rs2959836	0.82[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2959838	0.91[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2959843	0.95[CEU][hapmap];0.93[MEX][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes]
rs35683640	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35743198	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35783418	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3764189	0.82[ASW][hapmap];0.92[LWK][hapmap]
rs62027652	0.81[EUR][1000 genomes]
rs66529364	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72736806	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8040025	0.86[CEU][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv569998	chr15:76232605-76550938	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1048760	chr15:76334544-76496977	Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs12911337	UBE2Q2	cis	parietal	SCAN
rs12911337	ODF3L1	cis	cerebellum	SCAN
rs12911337	NRG4	cis	parietal	SCAN
rs12911337	LARP6	cis	cerebellum	SCAN
rs12911337	NRG4	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76358400-76370400	Weak transcription	Psoas Muscle	Psoas
2	chr15:76361400-76370200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr15:76363800-76367000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:76363800-76367600	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr15:76364000-76367400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr15:76364200-76367000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr15:76364200-76367400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr15:76365800-76367800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:76365800-76367800	Enhancers	NHEK	skin
10	chr15:76365800-76368000	Enhancers	HMEC	breast
11	chr15:76366000-76367000	Weak transcription	Placenta	Placenta
12	chr15:76366400-76367400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:76366800-76367200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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