Variant report

Variant	rs12911256
Chromosome Location	chr15:57557867-57557868
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1037956	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1037958	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10518899	0.84[EUR][1000 genomes]
rs11071309	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11629653	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11630910	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11631084	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632069	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11633061	0.82[EUR][1000 genomes]
rs11634352	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11635440	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11636201	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11636340	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11636348	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11636919	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11637955	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11856055	0.81[EUR][1000 genomes]
rs11856073	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11857507	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11857722	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858783	0.84[ASN][1000 genomes]
rs12050751	0.83[EUR][1000 genomes]
rs12050758	0.83[EUR][1000 genomes]
rs12898356	0.82[EUR][1000 genomes]
rs12899036	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12899588	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12901671	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12902099	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12902170	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12902581	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12903115	0.84[EUR][1000 genomes]
rs12903151	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12903221	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12904189	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12904321	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12904501	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12904561	0.81[ASN][1000 genomes]
rs12904602	0.81[EUR][1000 genomes]
rs12904933	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12906042	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906335	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12906566	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12908278	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12908760	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12909016	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12909696	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12910109	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12910556	0.81[EUR][1000 genomes]
rs12910832	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12911297	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12911518	0.85[EUR][1000 genomes]
rs12912210	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12912353	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12912392	0.80[EUR][1000 genomes]
rs12912868	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12914425	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12914481	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12915489	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12916478	0.85[EUR][1000 genomes]
rs12917093	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1462156	0.85[EUR][1000 genomes]
rs1545728	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17239431	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17239508	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1814585	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867641	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2278685	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2290938	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2414491	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2414492	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2414497	0.81[EUR][1000 genomes]
rs2431023	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2441925	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2593235	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2593237	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2593238	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2733341	0.82[ASN][1000 genomes]
rs3794613	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4238321	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4238322	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4303429	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4353440	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4369592	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4447362	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774250	0.82[EUR][1000 genomes]
rs4774251	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774252	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774913	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4774918	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4774919	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs5014892	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61996955	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61996957	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62022237	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7161965	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs745652	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs898901	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs935326	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs960946	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs978274	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904251	chr15:57241970-57575916	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv457164	chr15:57495060-57559387	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv569578	chr15:57495060-57559387	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57511800-57565000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr15:57520400-57576000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr15:57522400-57565400	Weak transcription	Spleen	Spleen
4	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
5	chr15:57526600-57574200	Weak transcription	Hela-S3	cervix
6	chr15:57533600-57568800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr15:57536800-57574200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr15:57537800-57598200	Weak transcription	Colonic Mucosa	Colon
9	chr15:57538400-57564800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
10	chr15:57539400-57574800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr15:57539600-57565200	Weak transcription	Aorta	Aorta
12	chr15:57539600-57565200	Weak transcription	Esophagus	oesophagus
13	chr15:57540600-57565400	Weak transcription	Ovary	ovary
14	chr15:57543200-57565200	Weak transcription	Right Ventricle	heart
15	chr15:57544600-57574800	Weak transcription	Fetal Brain Male	brain
16	chr15:57545800-57565200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:57546000-57580600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr15:57548200-57578000	Weak transcription	Fetal Heart	heart
19	chr15:57550400-57560400	Strong transcription	Dnd41	blood
20	chr15:57552000-57565200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:57552000-57565800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:57552200-57560000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:57552200-57565200	Weak transcription	Psoas Muscle	Psoas
24	chr15:57552200-57565200	Weak transcription	Small Intestine	intestine
25	chr15:57552200-57573200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr15:57552200-57588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr15:57552400-57565600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:57552400-57578600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr15:57552800-57560200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr15:57553000-57560800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr15:57553200-57560400	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr15:57553200-57585000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:57553600-57558600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:57553600-57560800	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr15:57553800-57558200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:57553800-57560400	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr15:57553800-57560400	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr15:57553800-57561200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr15:57553800-57563400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:57554000-57560800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr15:57554000-57560800	Strong transcription	Thymus	Thymus
42	chr15:57554200-57558000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr15:57554200-57558200	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr15:57554200-57558200	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr15:57554200-57558200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:57554200-57558200	Strong transcription	Liver	Liver
47	chr15:57554200-57558200	Strong transcription	Brain Hippocampus Middle	brain
48	chr15:57554200-57558200	Strong transcription	Fetal Lung	lung
49	chr15:57554200-57558400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:57554200-57558600	Strong transcription	HSMM	muscle

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