Variant report

Variant	rs12911297
Chromosome Location	chr15:57581311-57581312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57576732..57578817-chr15:57580600..57582934,2	K562	blood:
2	chr15:57574753..57576261-chr15:57580804..57583117,2	K562	blood:

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs1037956	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1037958	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11071309	0.82[ASN][1000 genomes]
rs11629653	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11630910	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631084	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11632069	0.81[ASN][1000 genomes]
rs11634352	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11635440	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11636340	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11637955	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11856073	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11857507	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11857722	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11858783	0.81[ASN][1000 genomes]
rs12899036	0.83[ASN][1000 genomes]
rs12899588	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12901671	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12902099	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12902170	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12902581	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12903115	0.80[EUR][1000 genomes]
rs12903151	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12903221	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12904189	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12904321	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12904501	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12904561	0.81[ASN][1000 genomes]
rs12904933	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12906042	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12906335	0.84[ASN][1000 genomes]
rs12906566	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12908278	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12908760	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12909016	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12909696	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12910109	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12911256	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12911518	0.81[EUR][1000 genomes]
rs12912353	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12912868	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12914425	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12914481	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12915489	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12916478	0.81[EUR][1000 genomes]
rs12917093	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1462156	0.81[EUR][1000 genomes]
rs1545728	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17239431	0.85[EUR][1000 genomes]
rs17239508	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1814585	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1867641	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2278685	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2290938	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2414492	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2431023	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2441925	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2593235	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2593237	0.83[ASN][1000 genomes]
rs2593238	0.81[ASN][1000 genomes]
rs3794613	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4238321	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4238322	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4303429	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4353440	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4369592	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4447362	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774251	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4774252	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4774913	0.81[ASN][1000 genomes]
rs4774918	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4774919	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs5014892	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61996955	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61996957	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7161965	0.83[ASN][1000 genomes]
rs898901	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs935326	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs960946	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs978274	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv833021	chr15:57495413-57751366	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv526342	chr15:57565859-57597280	Strong transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57522800-57585000	Strong transcription	Fetal Thymus	thymus
2	chr15:57537800-57598200	Weak transcription	Colonic Mucosa	Colon
3	chr15:57552200-57588600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr15:57553200-57585000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr15:57557000-57584600	Weak transcription	Colon Smooth Muscle	Colon
6	chr15:57557600-57588600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:57562600-57584200	Strong transcription	Fetal Muscle Trunk	muscle
8	chr15:57562600-57584600	Strong transcription	Fetal Muscle Leg	muscle
9	chr15:57564000-57582400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:57564000-57583600	Strong transcription	Dnd41	blood
11	chr15:57564800-57584600	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:57565000-57583400	Strong transcription	Thymus	Thymus
13	chr15:57565600-57584600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr15:57566000-57584400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr15:57566000-57591600	Weak transcription	Esophagus	oesophagus
16	chr15:57568000-57582600	Weak transcription	Aorta	Aorta
17	chr15:57568000-57588400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr15:57568000-57590600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr15:57568200-57591600	Weak transcription	Psoas Muscle	Psoas
20	chr15:57568600-57583800	Strong transcription	Fetal Intestine Large	intestine
21	chr15:57571400-57582200	Strong transcription	HSMM	muscle
22	chr15:57571400-57583600	Strong transcription	Liver	Liver
23	chr15:57571400-57584800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr15:57572200-57583200	Strong transcription	Placenta	Placenta
25	chr15:57572200-57584200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr15:57573200-57583000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr15:57573400-57581800	Strong transcription	NH-A	brain
28	chr15:57573800-57589000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:57574000-57583200	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:57574200-57583400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:57574600-57581400	Strong transcription	HUVEC	blood vessel
32	chr15:57575000-57589200	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr15:57575200-57583000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:57575400-57582800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:57575400-57583000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:57576800-57581400	Strong transcription	K562	blood
37	chr15:57576800-57582200	Weak transcription	Fetal Intestine Small	intestine
38	chr15:57577000-57581400	Strong transcription	Primary T cells from cord blood	blood
39	chr15:57577000-57583400	Enhancers	Primary B cells from peripheral blood	blood
40	chr15:57577400-57582800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr15:57577800-57581600	Strong transcription	Osteobl	bone
42	chr15:57577800-57582800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr15:57578000-57583200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr15:57578200-57582800	Weak transcription	Gastric	stomach
45	chr15:57578200-57583400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:57578200-57589200	Weak transcription	Pancreas	Pancrea
47	chr15:57578600-57582600	Weak transcription	Brain Hippocampus Middle	brain
48	chr15:57578600-57591600	Weak transcription	Spleen	Spleen
49	chr15:57578600-57598200	Weak transcription	Right Ventricle	heart
50	chr15:57578800-57581600	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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