Variant report

Variant	rs12912226
Chromosome Location	chr15:45985708-45985709
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45980031..45981543-chr15:45985356..45987989,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2433618	1.00[ASN][1000 genomes]
rs2733251	1.00[ASN][1000 genomes]
rs35554150	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55932467	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7162029	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45950600-45988400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:45950800-45986000	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr15:45953400-45986200	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr15:45957400-45985800	Weak transcription	HSMMtube	muscle
5	chr15:45958400-45986400	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:45959600-45986200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr15:45960000-45986000	Strong transcription	Duodenum Smooth Muscle	Duodenum
8	chr15:45960200-45987800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr15:45960400-45985800	Strong transcription	Primary T helper cells fromperipheralblood	blood
10	chr15:45960400-45986200	Strong transcription	Duodenum Mucosa	Duodenum
11	chr15:45960400-45987000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:45960400-45988200	Strong transcription	Rectal Mucosa Donor 31	rectum
13	chr15:45960600-45985800	Strong transcription	Primary T cells from cord blood	blood
14	chr15:45960600-45986000	Strong transcription	Primary B cells from peripheral blood	blood
15	chr15:45960600-45986000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:45960600-45986600	Strong transcription	Primary B cells from cord blood	blood
17	chr15:45960600-45987200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr15:45960800-45987000	Strong transcription	Liver	Liver
19	chr15:45961800-45987000	Strong transcription	Stomach Smooth Muscle	stomach
20	chr15:45964800-45986000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr15:45968800-45989600	Weak transcription	Placenta	Placenta
22	chr15:45970400-45988200	Strong transcription	Sigmoid Colon	Sigmoid Colon
23	chr15:45971000-45989000	Strong transcription	Primary neutrophils fromperipheralblood	blood
24	chr15:45971600-45986400	Strong transcription	Fetal Intestine Small	intestine
25	chr15:45972000-45986000	Strong transcription	Spleen	Spleen
26	chr15:45972200-45985800	Strong transcription	Skeletal Muscle Male	skeletal muscle
27	chr15:45972600-45986000	Strong transcription	Esophagus	oesophagus
28	chr15:45972600-45986400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr15:45973000-45985800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:45973000-45986000	Strong transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:45973200-45985800	Strong transcription	Adipose Nuclei	Adipose
32	chr15:45973200-45986200	Strong transcription	Lung	lung
33	chr15:45975400-45989400	Weak transcription	HepG2	liver
34	chr15:45976600-45985800	Strong transcription	Thymus	Thymus
35	chr15:45976800-45986000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr15:45977000-45986400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:45977400-45985800	Strong transcription	Gastric	stomach
38	chr15:45977600-45986800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:45977800-45988200	Weak transcription	Stomach Mucosa	stomach
40	chr15:45979000-45985800	Strong transcription	GM12878-XiMat	blood
41	chr15:45979400-45986000	Strong transcription	Rectal Smooth Muscle	rectum
42	chr15:45979600-45986400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:45980000-45985800	Strong transcription	Right Ventricle	heart
44	chr15:45982800-45986000	Strong transcription	Aorta	Aorta
45	chr15:45983200-45986600	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:45983200-45990800	Weak transcription	Small Intestine	intestine
47	chr15:45983200-45991800	Weak transcription	A549	lung
48	chr15:45983200-45996000	Weak transcription	Colon Smooth Muscle	Colon
49	chr15:45983400-45987800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:45983400-45987800	Weak transcription	Fetal Thymus	thymus

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