Variant report

Variant	rs35554150
Chromosome Location	chr15:45990298-45990299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12912226	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55932467	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45983200-45990800	Weak transcription	Small Intestine	intestine
2	chr15:45983200-45991800	Weak transcription	A549	lung
3	chr15:45983200-45996000	Weak transcription	Colon Smooth Muscle	Colon
4	chr15:45983400-45996800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr15:45983600-45996400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr15:45983800-45994600	Weak transcription	Ovary	ovary
7	chr15:45983800-45996200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr15:45984000-45994400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:45984200-45991000	Weak transcription	Left Ventricle	heart
10	chr15:45984200-45994200	Weak transcription	NHEK	skin
11	chr15:45984200-45995400	Weak transcription	Psoas Muscle	Psoas
12	chr15:45984200-45996200	Weak transcription	Fetal Stomach	stomach
13	chr15:45984200-45996200	Weak transcription	NHDF-Ad	bronchial
14	chr15:45984400-45996400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:45985200-45991400	Weak transcription	Fetal Intestine Large	intestine
16	chr15:45985200-45996200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr15:45985400-45996400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr15:45985400-45996800	Weak transcription	HMEC	breast
19	chr15:45985600-45994400	Weak transcription	Pancreas	Pancrea
20	chr15:45985800-45994400	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr15:45985800-45995800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr15:45985800-45995800	Weak transcription	GM12878-XiMat	blood
23	chr15:45985800-45996200	Weak transcription	Gastric	stomach
24	chr15:45985800-45996400	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:45985800-45996400	Weak transcription	Adipose Nuclei	Adipose
26	chr15:45985800-45996400	Weak transcription	Right Ventricle	heart
27	chr15:45986000-45992800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:45986000-45993800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr15:45986000-45994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:45986000-45994400	Weak transcription	Esophagus	oesophagus
31	chr15:45986000-45994800	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr15:45986000-45996200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr15:45986000-45996400	Weak transcription	Aorta	Aorta
34	chr15:45986000-45996400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:45986000-45996400	Weak transcription	Spleen	Spleen
36	chr15:45986000-45996600	Weak transcription	Colonic Mucosa	Colon
37	chr15:45986200-45996400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr15:45986200-45996400	Weak transcription	Lung	lung
39	chr15:45986200-45996400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr15:45986400-45991400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr15:45986400-45994600	Weak transcription	Fetal Intestine Small	intestine
42	chr15:45986400-45996200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr15:45986600-45992200	Weak transcription	Primary B cells from cord blood	blood
44	chr15:45986800-45996000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:45987000-45994000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:45987000-45996400	Weak transcription	Liver	Liver
47	chr15:45987000-45996400	Weak transcription	Stomach Smooth Muscle	stomach
48	chr15:45987200-45993800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:45987800-45992200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr15:45987800-45996200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links