Variant report

Variant	rs12916946
Chromosome Location	chr15:93278300-93278301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57631646	0.84[ASN][1000 genomes]
rs59457017	0.84[ASN][1000 genomes]
rs60293414	0.84[ASN][1000 genomes]
rs61238742	0.84[ASN][1000 genomes]
rs61748834	0.88[ASN][1000 genomes]
rs6496980	0.81[ASN][1000 genomes]
rs6496981	0.82[ASN][1000 genomes]
rs8024037	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93277000-93279200	Enhancers	Spleen	Spleen
2	chr15:93277800-93279000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:93277800-93279000	Weak transcription	HSMMtube	muscle
4	chr15:93278000-93278400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr15:93278000-93278600	Enhancers	K562	blood
6	chr15:93278000-93279200	Enhancers	Right Atrium	heart
7	chr15:93278000-93279800	Weak transcription	Brain Angular Gyrus	brain
8	chr15:93278200-93278400	Enhancers	A549	lung
9	chr15:93278200-93278600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:93278200-93278600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:93278200-93279000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:93278200-93279200	Enhancers	Fetal Kidney	kidney
13	chr15:93278200-93279200	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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