Variant report

Variant	rs60293414
Chromosome Location	chr15:93276536-93276537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12916946	0.84[ASN][1000 genomes]
rs56663959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57369878	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57631646	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57734124	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs58961972	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs59457017	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61238742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61748834	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6496980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6496981	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7165996	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7167675	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7177023	0.82[EUR][1000 genomes]
rs8024037	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8033443	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93258200-93277000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93258200-93277000	Weak transcription	Left Ventricle	heart
3	chr15:93258400-93277000	Weak transcription	Ovary	ovary
4	chr15:93258600-93277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:93258800-93277000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:93258800-93277000	Weak transcription	Fetal Brain Male	brain
7	chr15:93264400-93276600	Weak transcription	Fetal Kidney	kidney
8	chr15:93267600-93277000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr15:93267600-93277000	Weak transcription	Right Ventricle	heart
10	chr15:93271600-93277000	Weak transcription	Colonic Mucosa	Colon
11	chr15:93272200-93277000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr15:93274600-93276600	Weak transcription	Fetal Lung	lung
13	chr15:93274600-93277000	Weak transcription	Fetal Stomach	stomach
14	chr15:93275600-93277000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr15:93276000-93276800	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr15:93276200-93277000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr15:93276400-93276600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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