Variant report
| Variant | rs58961972 |
|---|---|
| Chromosome Location | chr15:93280569-93280570 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:93279332..93281428-chr15:93446156..93447922,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000173575 | Chromatin interaction |
| ENSG00000264173 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11852377 | 0.81[EUR][1000 genomes] |
| rs56663959 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs57369878 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57631646 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs57734124 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59457017 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs60293414 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61238742 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs61748834 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6496980 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs6496981 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7165996 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7167675 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7177023 | 0.91[EUR][1000 genomes] |
| rs8024037 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs8033443 | 1.00[AMR][1000 genomes];0.83[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv904499 | chr15:92914795-93472582 | Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 163 gene(s) | inside rSNPs | diseases |
| 2 | nsv948738 | chr15:93070742-93728147 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 169 gene(s) | inside rSNPs | diseases |
| 3 | nsv1049490 | chr15:93134405-93591660 | Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 151 gene(s) | inside rSNPs | diseases |
| 4 | nsv1040501 | chr15:93177153-93286393 | Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
