Variant report

Variant	rs61748834
Chromosome Location	chr15:93277355-93277356
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:42)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:42 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:93277128-93277637	MCF-7	breast:	n/a	n/a
2	POLR2A	chr15:93277180-93277507	Gliobla	brain:	n/a	n/a
3	YY1	chr15:93277050-93277567	A549	lung:	n/a	n/a
4	MYC	chr15:93277274-93277496	MCF-7	breast:	n/a	n/a
5	POLR2A	chr15:93277113-93277512	A549	lung:	n/a	n/a
6	POLR2A	chr15:93277110-93277542	A549	lung:	n/a	n/a
7	HCFC1	chr15:93277132-93277641	K562	blood:	n/a	n/a
8	EGR1	chr15:93277347-93277543	K562	blood:	n/a	n/a
9	POLR2A	chr15:93277088-93277625	MCF-7	breast:	n/a	n/a
10	POLR2A	chr15:93277143-93277503	A549	lung:	n/a	n/a
11	POLR2A	chr15:93277130-93277508	MCF-7	breast:	n/a	n/a
12	E2F6	chr15:93277335-93277505	K562	blood:	n/a	n/a
13	POLR2A	chr15:93277348-93277516	GM12878	blood:	n/a	n/a
14	MAX	chr15:93277229-93277407	K562	blood:	n/a	n/a
15	HEY1	chr15:93277162-93277463	K562	blood:	n/a	n/a
16	POLR2A	chr15:93277090-93277568	K562	blood:	n/a	n/a
17	YY1	chr15:93277087-93277860	SK-N-SH	brain:	n/a	chr15:93277644-93277658
18	YY1	chr15:93277101-93277576	K562	blood:	n/a	n/a
19	RCOR1	chr15:93276957-93277785	K562	blood:	n/a	n/a
20	ZNF263	chr15:93276982-93277902	HEK293-T-REx	kidney:	n/a	chr15:93277007-93277016
21	YY1	chr15:93277316-93277561	GM12892	blood:	n/a	n/a
22	TCF7L2	chr15:93277213-93277789	PANC-1	pancreas:	n/a	n/a
23	YY1	chr15:93277317-93277516	GM12878	blood:	n/a	n/a
24	HA-E2F1	chr15:93277082-93277824	MCF-7	breast:	n/a	n/a
25	POLR2A	chr15:93277149-93277578	A549	lung:	n/a	n/a
26	UBTF	chr15:93277333-93277516	K562	blood:	n/a	n/a
27	HEY1	chr15:93277223-93277529	K562	blood:	n/a	n/a
28	ZBTB7A	chr15:93277337-93277535	K562	blood:	n/a	n/a
29	MAX	chr15:93277082-93277984	A549	lung:	n/a	n/a
30	POLR2A	chr15:93277192-93277497	A549	lung:	n/a	n/a
31	MAX	chr15:93277322-93277634	K562	blood:	n/a	n/a
32	YY1	chr15:93277320-93277831	SK-N-SH_RA	brain:	n/a	chr15:93277644-93277658
33	POLR2A	chr15:93277111-93277671	ProgFib	skin:	n/a	n/a
34	YY1	chr15:93277092-93277606	SK-N-SH_RA	brain:	n/a	n/a
35	POLR2A	chr15:93277290-93277520	SK-N-SH	brain:	n/a	n/a
36	POLR2A	chr15:93277113-93277435	K562	blood:	n/a	n/a
37	YY1	chr15:93277223-93277563	SK-N-SH	brain:	n/a	n/a
38	YY1	chr15:93277249-93277552	ECC-1	luminal epithelium:	n/a	n/a
39	YY1	chr15:93277183-93277637	K562	blood:	n/a	n/a
40	POLR2A	chr15:93277214-93277412	ECC-1	luminal epithelium:	n/a	n/a
41	BHLHE40	chr15:93276975-93277355	K562	blood:	n/a	n/a
42	UBTF	chr15:93277283-93277481	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:93277307-93277357	AG04449	skin:	fetal
2	chr15:93277307-93277357	HAEpiC	amniotic membrane:	n/a
3	chr15:93277307-93277357	HRCEpiC	kidney:	n/a
4	chr15:93277307-93277357	LNCaP	prostate:	n/a
5	chr15:93277307-93277357	SKMC	muscle:	n/a
6	chr15:93277307-93277357	GM12892	blood:	n/a
7	chr15:93277307-93277357	BJ	skin:	n/a
8	chr15:93277307-93277357	AoSMC	blood vessel:	n/a
9	chr15:93277307-93277357	BE2_C	brain:	n/a
10	chr15:93277307-93277357	PrEC	prostate:	n/a
11	chr15:93277307-93277357	NHDF-neo	bronchial:	n/a
12	chr15:93277307-93277357	ECC-1	luminal epithelium:	n/a
13	chr15:93277307-93277357	HCF	heart:	n/a
14	chr15:93277307-93277357	SK-N-MC	brain:	n/a
15	chr15:93277307-93277357	SK-N-SH	brain:	n/a
16	chr15:93277307-93277357	U87	brain:	n/a
17	chr15:93277307-93277357	HRE	kidney:	n/a
18	chr15:93277307-93277357	MCF-7	breast:	n/a
19	chr15:93277307-93277357	AG10803	skin:	n/a
20	chr15:93277307-93277357	AG04450	lung:	fetal
21	chr15:93277307-93277357	MCF10A-Er-Src	breast:	n/a
22	chr15:93277307-93277357	AG09309	skin:	n/a
23	chr15:93277307-93277357	A549	lung:	n/a
24	chr15:93277307-93277357	T-47D	breast:	n/a
25	chr15:93277307-93277357	NH-A	brain:	n/a
26	chr15:93277307-93277357	GM06990	blood:	n/a
27	chr15:93277307-93277357	ProgFib	skin:	n/a
28	chr15:93277307-93277357	SAEC	small airway:	n/a
29	chr15:93277307-93277357	NT2-D1	testis:	n/a
30	chr15:93277307-93277357	K562	blood:	n/a
31	chr15:93277307-93277357	RPTEC	kidney:	n/a
32	chr15:93277307-93277357	Hela-S3	cervix:	n/a
33	chr15:93277307-93277357	PANC-1	pancreas:	n/a
34	chr15:93277307-93277357	HEK293	kidney:	embryo
35	chr15:93277307-93277357	HEEpiC	esophagus:	n/a
36	chr15:93277307-93277357	CMK	blood:	n/a
37	chr15:93277307-93277357	HUVEC	blood vessel:	n/a
38	chr15:93277307-93277357	Caco-2	colon:	n/a
39	chr15:93277307-93277357	HIPEpiC	eye:	n/a
40	chr15:93277307-93277357	HMEC	breast:	n/a
41	chr15:93277307-93277357	HepG2	liver:	n/a
42	chr15:93277307-93277357	GM12878	blood:	n/a
43	chr15:93277307-93277357	NHBE	bronchial:	n/a
44	chr15:93277307-93277357	HRPEpiC	eye:	n/a
45	chr15:93277307-93277357	HNPCEpiC	eye:	n/a
46	chr15:93277307-93277357	PFSK-1	brain:	n/a
47	chr15:93277307-93277357	Hepatocyte	liver:	n/a
48	chr15:93277307-93277357	HCM	heart:	n/a
49	chr15:93277307-93277357	HCPEpiC	choroid plexus:	n/a
50	chr15:93277307-93277357	GM19239	blood:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93267015..93268960-chr15:93276120..93278418,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258741	TF binding region
ENSG00000258741	CpG island
ENSG00000272298	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11852377	0.81[EUR][1000 genomes]
rs12916946	0.88[ASN][1000 genomes]
rs56663959	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57369878	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57631646	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57734124	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58961972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59457017	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60293414	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61238742	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6496980	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6496981	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7165996	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7167675	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7177023	0.91[EUR][1000 genomes]
rs8024037	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8033443	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
2	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
3	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
4	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93276600-93277800	Active TSS	Fetal Lung	lung
2	chr15:93276600-93278000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr15:93276600-93278000	Active TSS	Brain Anterior Caudate	brain
4	chr15:93276600-93278000	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr15:93276600-93278200	Active TSS	Fetal Kidney	kidney
6	chr15:93276800-93277600	Active TSS	Primary hematopoietic stem cells	blood
7	chr15:93276800-93277600	Active TSS	NH-A	brain
8	chr15:93276800-93277800	Active TSS	Primary T cells from cord blood	blood
9	chr15:93276800-93277800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:93276800-93277800	Active TSS	A549	lung
11	chr15:93276800-93278000	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr15:93276800-93278000	Active TSS	Brain Angular Gyrus	brain
13	chr15:93276800-93278000	Active TSS	Brain Cingulate Gyrus	brain
14	chr15:93276800-93278000	Active TSS	Brain Hippocampus Middle	brain
15	chr15:93276800-93278000	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr15:93276800-93278000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr15:93276800-93278000	Active TSS	Brain Substantia Nigra	brain
18	chr15:93276800-93278000	Active TSS	Duodenum Smooth Muscle	Duodenum
19	chr15:93277000-93277400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:93277000-93277400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:93277000-93277400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
22	chr15:93277000-93277400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr15:93277000-93277400	Flanking Active TSS	Primary B cells from cord blood	blood
24	chr15:93277000-93277400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr15:93277000-93277400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr15:93277000-93277400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr15:93277000-93277400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:93277000-93277400	Flanking Active TSS	Duodenum Mucosa	Duodenum
29	chr15:93277000-93277400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
30	chr15:93277000-93277400	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr15:93277000-93277400	Flanking Active TSS	K562	blood
32	chr15:93277000-93277400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
33	chr15:93277000-93277600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr15:93277000-93277600	Active TSS	Primary T helper cells fromperipheralblood	blood
35	chr15:93277000-93277600	Active TSS	Liver	Liver
36	chr15:93277000-93277600	Active TSS	Gastric	stomach
37	chr15:93277000-93277600	Active TSS	HMEC	breast
38	chr15:93277000-93277800	Active TSS	H1 Cell Line	embryonic stem cell
39	chr15:93277000-93277800	Active TSS	H9 Cell Line	embryonic stem cell
40	chr15:93277000-93277800	Active TSS	iPS-15b Cell Line	embryonic stem cell
41	chr15:93277000-93277800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr15:93277000-93277800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:93277000-93277800	Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr15:93277000-93277800	Active TSS	Primary T helper naive cells from peripheral blood	blood
45	chr15:93277000-93277800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
46	chr15:93277000-93277800	Active TSS	Primary T helper cells PMA-I stimulated	--
47	chr15:93277000-93277800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr15:93277000-93277800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr15:93277000-93277800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
50	chr15:93277000-93277800	Active TSS	Esophagus	oesophagus

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