Variant report

Variant	rs12935156
Chromosome Location	chr16:31270172-31270173
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:31268013..31271102-chr16:31279440..31281089,3	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1143679	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11860650	0.81[EUR][1000 genomes]
rs11864813	0.81[EUR][1000 genomes]
rs11865746	0.81[EUR][1000 genomes]
rs12103025	0.81[EUR][1000 genomes]
rs12917874	0.85[EUR][1000 genomes]
rs12920597	0.84[AMR][1000 genomes]
rs12928725	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12928810	0.81[EUR][1000 genomes]
rs13338069	0.81[EUR][1000 genomes]
rs28825532	0.81[EUR][1000 genomes]
rs34082782	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34550882	0.86[EUR][1000 genomes]
rs34572943	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35314490	0.87[EUR][1000 genomes]
rs35383035	0.81[EUR][1000 genomes]
rs35472514	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36001237	0.81[EUR][1000 genomes]
rs36055763	0.83[EUR][1000 genomes]
rs71389500	0.81[EUR][1000 genomes]
rs71390269	0.81[EUR][1000 genomes]
rs7184339	0.81[EUR][1000 genomes]
rs7184677	0.81[EUR][1000 genomes]
rs7187713	0.81[EUR][1000 genomes]
rs7190018	0.81[EUR][1000 genomes]
rs7190807	0.81[EUR][1000 genomes]
rs7198598	0.81[EUR][1000 genomes]
rs7206312	0.81[EUR][1000 genomes]
rs73534420	0.81[EUR][1000 genomes]
rs8056276	0.81[EUR][1000 genomes]
rs8056944	0.87[EUR][1000 genomes]
rs9745421	0.81[EUR][1000 genomes]
rs9888739	0.81[EUR][1000 genomes]
rs9888879	0.81[EUR][1000 genomes]
rs9922766	0.84[EUR][1000 genomes]
rs9923357	0.84[EUR][1000 genomes]
rs9923767	0.81[EUR][1000 genomes]
rs9928372	0.81[EUR][1000 genomes]
rs9928749	0.81[EUR][1000 genomes]
rs9930524	0.81[EUR][1000 genomes]
rs9933937	0.81[EUR][1000 genomes]
rs9936831	0.85[EUR][1000 genomes]
rs9937645	0.81[EUR][1000 genomes]
rs9938063	0.81[EUR][1000 genomes]
rs9939679	0.83[EUR][1000 genomes]
rs9940397	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
2	nsv1066073	chr16:31219071-31278572	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31262800-31271800	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr16:31263000-31271000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr16:31265200-31270600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr16:31265200-31271400	Weak transcription	Right Atrium	heart
5	chr16:31265200-31271600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr16:31265200-31276600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr16:31265400-31270800	Weak transcription	Spleen	Spleen
8	chr16:31265600-31270200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr16:31265800-31271200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr16:31265800-31276400	Weak transcription	A549	lung
11	chr16:31267200-31270400	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr16:31268200-31271000	Weak transcription	K562	blood
13	chr16:31269000-31271200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr16:31269200-31270800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr16:31269600-31271000	Enhancers	Primary B cells from cord blood	blood
16	chr16:31269600-31271000	Enhancers	Primary B cells from peripheral blood	blood
17	chr16:31269600-31271000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr16:31269800-31270200	Enhancers	GM12878-XiMat	blood
19	chr16:31269800-31277800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr16:31270000-31270400	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr16:31270000-31271400	Enhancers	Primary hematopoietic stem cells	blood
22	chr16:31270000-31271600	Enhancers	Primary hematopoietic stem cells short term culture	blood

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