Variant report

Variant	rs9922766
Chromosome Location	chr16:31286030-31286031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:31145517..31147775-chr16:31283695..31286612,2	MCF-7	breast:
2	chr16:31212185..31214619-chr16:31284679..31286536,2	MCF-7	breast:
3	chr16:31278411..31282963-chr16:31285984..31289052,5	MCF-7	breast:
4	chr16:31282598..31284168-chr16:31285265..31288546,3	MCF-7	breast:
5	chr16:31239331..31241188-chr16:31284758..31286567,2	MCF-7	breast:
6	chr16:31199087..31201916-chr16:31285145..31286714,2	K562	blood:

Variant related genes	Relation type
ENSG00000103490	Chromatin interaction
ENSG00000261359	Chromatin interaction
ENSG00000169896	Chromatin interaction
ENSG00000252876	Chromatin interaction
ENSG00000052344	Chromatin interaction
ENSG00000089280	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11150615	1.00[ASN][1000 genomes]
rs1143678	1.00[ASN][1000 genomes]
rs1143679	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1143683	1.00[ASN][1000 genomes]
rs11574636	1.00[ASN][1000 genomes]
rs11574637	1.00[ASN][1000 genomes]
rs11859300	1.00[ASN][1000 genomes]
rs11859349	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11860650	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11861161	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864503	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864541	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11864813	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11865746	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102768	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12102791	0.90[EUR][1000 genomes]
rs12103025	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12917874	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12920597	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12928725	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12928810	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12935156	0.84[EUR][1000 genomes]
rs13331557	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13338069	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28385574	1.00[ASN][1000 genomes]
rs28773820	1.00[ASN][1000 genomes]
rs28825532	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28834423	1.00[ASN][1000 genomes]
rs28855735	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34082782	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34572943	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34767000	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34770440	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35314490	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35383035	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35472514	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36001237	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36055763	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41476751	1.00[ASN][1000 genomes]
rs4548893	1.00[ASN][1000 genomes]
rs4632147	1.00[ASN][1000 genomes]
rs58408589	1.00[ASN][1000 genomes]
rs59559257	1.00[ASN][1000 genomes]
rs60312440	1.00[ASN][1000 genomes]
rs6565227	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6565228	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67898294	1.00[ASN][1000 genomes]
rs71389500	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs71390269	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71391210	1.00[ASN][1000 genomes]
rs7184339	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184677	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7187713	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190018	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7190807	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7192039	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7193268	1.00[ASN][1000 genomes]
rs7198598	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199496	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199532	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7200615	1.00[ASN][1000 genomes]
rs7204735	1.00[ASN][1000 genomes]
rs7206312	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73534420	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8056276	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8056944	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9745421	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888739	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9888879	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9923767	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9928372	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9928749	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9930524	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933520	1.00[ASN][1000 genomes]
rs9933937	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9936831	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9937645	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9938063	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9939679	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9940397	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31277400-31289000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr16:31277400-31290000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:31277600-31290400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr16:31277600-31290400	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr16:31277600-31290600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:31278000-31286600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr16:31279600-31288600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr16:31279600-31290400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr16:31280000-31288200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr16:31281400-31289200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr16:31282200-31290000	Strong transcription	Primary B cells from peripheral blood	blood
12	chr16:31283600-31286400	Weak transcription	Lung	lung
13	chr16:31283600-31286600	Weak transcription	Liver	Liver
14	chr16:31284000-31291200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr16:31284200-31286400	Weak transcription	Adipose Nuclei	Adipose
16	chr16:31284400-31287600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr16:31284600-31287200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr16:31284600-31287200	Enhancers	HMEC	breast
19	chr16:31284800-31287200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr16:31284800-31287200	Enhancers	NHEK	skin
21	chr16:31284800-31287400	Strong transcription	Primary B cells from cord blood	blood
22	chr16:31284800-31287600	Strong transcription	Spleen	Spleen
23	chr16:31285000-31287200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr16:31285400-31289400	Weak transcription	Pancreas	Pancrea
25	chr16:31285400-31292000	Weak transcription	Esophagus	oesophagus

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