Variant report

Variant	rs11859300
Chromosome Location	chr16:31355895-31355896
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs11150615	1.00[CHB][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1143678	1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1143679	1.00[ASN][1000 genomes]
rs1143683	1.00[CHB][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574636	1.00[CHB][hapmap];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11574637	1.00[CHB][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11859349	1.00[ASN][1000 genomes]
rs11860650	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11861161	1.00[ASN][1000 genomes]
rs11864503	1.00[ASN][1000 genomes]
rs11864541	1.00[ASN][1000 genomes]
rs11864813	1.00[ASN][1000 genomes]
rs11865746	1.00[ASN][1000 genomes]
rs12102768	1.00[ASN][1000 genomes]
rs12103025	1.00[ASN][1000 genomes]
rs12917874	1.00[ASN][1000 genomes]
rs12920597	1.00[ASN][1000 genomes]
rs12928725	1.00[ASN][1000 genomes]
rs12928810	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13331557	1.00[ASN][1000 genomes]
rs13338069	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs28385574	1.00[ASN][1000 genomes]
rs28773820	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28821928	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28825532	1.00[ASN][1000 genomes]
rs28834423	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28855735	1.00[ASN][1000 genomes]
rs34082782	1.00[ASN][1000 genomes]
rs34572943	1.00[ASN][1000 genomes]
rs34767000	1.00[ASN][1000 genomes]
rs34770440	1.00[ASN][1000 genomes]
rs35314490	1.00[ASN][1000 genomes]
rs35383035	1.00[ASN][1000 genomes]
rs35472514	1.00[ASN][1000 genomes]
rs36001237	1.00[ASN][1000 genomes]
rs36055763	1.00[ASN][1000 genomes]
rs41476751	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4548893	1.00[CHB][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4632147	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58408589	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59559257	1.00[ASN][1000 genomes]
rs60312440	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6565227	1.00[ASN][1000 genomes]
rs6565228	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs67898294	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71390269	1.00[ASN][1000 genomes]
rs71391210	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184339	1.00[ASN][1000 genomes]
rs7184677	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7187713	1.00[ASN][1000 genomes]
rs7190018	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7190807	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7192039	1.00[ASN][1000 genomes]
rs7193268	1.00[CHB][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7198598	1.00[ASN][1000 genomes]
rs7199496	1.00[ASN][1000 genomes]
rs7199532	1.00[ASN][1000 genomes]
rs7200615	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7204735	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7206312	1.00[ASN][1000 genomes]
rs73534420	1.00[ASN][1000 genomes]
rs7499077	1.00[CHB][hapmap]
rs8056276	1.00[ASN][1000 genomes]
rs8056944	1.00[ASN][1000 genomes]
rs9745421	1.00[ASN][1000 genomes]
rs9888739	1.00[ASN][1000 genomes]
rs9888879	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9922766	1.00[ASN][1000 genomes]
rs9923357	1.00[ASN][1000 genomes]
rs9923767	1.00[ASN][1000 genomes]
rs9928372	1.00[ASN][1000 genomes]
rs9928749	1.00[ASN][1000 genomes]
rs9930524	1.00[ASN][1000 genomes]
rs9933520	1.00[CHB][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9933937	1.00[ASN][1000 genomes]
rs9936831	1.00[ASN][1000 genomes]
rs9937645	1.00[ASN][1000 genomes]
rs9937837	1.00[CHB][hapmap]
rs9938063	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9939679	1.00[ASN][1000 genomes]
rs9940397	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059459	chr16:31299088-31462251	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv542901	chr16:31299088-31462251	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	esv3392534	chr16:31303038-31573066	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	104 gene(s)	inside rSNPs	diseases
4	nsv1058992	chr16:31337455-31414881	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv542902	chr16:31337455-31414881	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv1061980	chr16:31338462-31415471	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:31343000-31400800	Weak transcription	Right Atrium	heart
2	chr16:31350200-31356000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:31350200-31356200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr16:31355600-31357000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr16:31355600-31365600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr16:31355800-31356000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr16:31355800-31356600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr16:31355800-31356600	Enhancers	Primary B cells from peripheral blood	blood
9	chr16:31355800-31356600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr16:31355800-31356600	Enhancers	Spleen	Spleen
11	chr16:31355800-31356600	Flanking Active TSS	GM12878-XiMat	blood

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