The 2.0 version of rSNPBase

Variant report

Variant rs34572943
Chromosome Location chr16:31272353-31272354
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:33 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:31265200-31276600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr16:31265800-31276400 Weak transcription A549 lung
3 chr16:31269800-31277800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
4 chr16:31270400-31273800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
5 chr16:31270400-31275000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
6 chr16:31271000-31272600 Flanking Active TSS Primary Natural Killer cells fromperipheralblood blood
7 chr16:31271000-31272600 Enhancers K562 blood
8 chr16:31271000-31273200 Flanking Active TSS Primary B cells from cord blood blood
9 chr16:31271200-31276400 Weak transcription Primary T killer naive cells fromperipheralblood blood
10 chr16:31271400-31272400 Flanking Active TSS Primary hematopoietic stem cells blood
11 chr16:31271400-31272400 Bivalent/Poised TSS Brain Hippocampus Middle brain
12 chr16:31271400-31272400 Active TSS Rectal Mucosa Donor 29 rectum
13 chr16:31271400-31276000 Weak transcription Fetal Thymus thymus
14 chr16:31271600-31272400 Bivalent/Poised TSS Duodenum Smooth Muscle Duodenum
15 chr16:31271800-31272600 Enhancers Primary T helper cells PMA-I stimulated --
16 chr16:31271800-31274200 Enhancers Primary T helper cells fromperipheralblood blood
17 chr16:31271800-31274600 Weak transcription Primary T killer memory cells from peripheral blood blood
18 chr16:31272000-31272600 Enhancers Primary T cells fromperipheralblood blood
19 chr16:31272000-31276400 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
20 chr16:31272000-31276600 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr16:31272000-31277000 Enhancers Primary B cells from peripheral blood blood
22 chr16:31272200-31272600 Active TSS Primary mononuclear cells fromperipheralblood Blood
23 chr16:31272200-31272800 Weak transcription Adipose Nuclei Adipose
24 chr16:31272200-31273000 Flanking Active TSS Primary monocytes fromperipheralblood blood
25 chr16:31272200-31274000 Weak transcription GM12878-XiMat blood
26 chr16:31272200-31274600 Weak transcription Primary T cells from cord blood blood
27 chr16:31272200-31274600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
28 chr16:31272200-31276400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
29 chr16:31272200-31276600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr16:31272200-31276600 Weak transcription Spleen Spleen
31 chr16:31272200-31276800 Weak transcription Placenta Placenta
32 chr16:31272200-31277000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
33 chr16:31272200-31277600 Enhancers Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015