The 2.0 version of rSNPBase

Variant report

Variant rs12946393
Chromosome Location chr17:38087429-38087430
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38085000-38089400 Weak transcription iPS-15b Cell Line embryonic stem cell
2 chr17:38085000-38089600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
3 chr17:38085000-38090000 Weak transcription iPS-20b Cell Line embryonic stem cell
4 chr17:38085000-38090000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr17:38085000-38090000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr17:38085000-38090200 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr17:38085000-38090200 Weak transcription Sigmoid Colon Sigmoid Colon
8 chr17:38085000-38095800 Weak transcription Primary T cells from cord blood blood
9 chr17:38085200-38090000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr17:38085200-38090200 Weak transcription ES-I3 Cell Line embryonic stem cell
11 chr17:38085200-38090200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
12 chr17:38085200-38090200 Weak transcription Gastric stomach
13 chr17:38085200-38090400 Weak transcription Right Ventricle heart
14 chr17:38085200-38092200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr17:38085400-38089400 Weak transcription Left Ventricle heart
16 chr17:38085400-38090000 Weak transcription H1 Cell Line embryonic stem cell
17 chr17:38085400-38090000 Weak transcription Psoas Muscle Psoas
18 chr17:38085400-38090000 Weak transcription Right Atrium heart
19 chr17:38085400-38090400 Weak transcription iPS-18 Cell Line embryonic stem cell
20 chr17:38085400-38090400 Weak transcription Stomach Mucosa stomach
21 chr17:38085400-38095800 Weak transcription Brain Substantia Nigra brain
22 chr17:38085400-38096000 Weak transcription Pancreas Pancrea
23 chr17:38085600-38094400 Weak transcription Brain Inferior Temporal Lobe brain
24 chr17:38085600-38095600 Weak transcription Fetal Intestine Small intestine
25 chr17:38085800-38090400 Weak transcription Fetal Kidney kidney
26 chr17:38085800-38096000 Weak transcription Brain Hippocampus Middle brain
27 chr17:38086000-38089400 Weak transcription Spleen Spleen
28 chr17:38086000-38089600 Weak transcription Placenta Placenta
29 chr17:38086000-38090000 Weak transcription Liver Liver
30 chr17:38086000-38090400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
31 chr17:38086000-38095600 Weak transcription Stomach Smooth Muscle stomach
32 chr17:38086200-38090000 Weak transcription GM12878-XiMat blood
33 chr17:38086200-38090200 Weak transcription A549 lung
34 chr17:38086200-38090400 Weak transcription HSMMtube muscle
35 chr17:38086200-38095600 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr17:38086400-38090000 Weak transcription Fetal Heart heart
37 chr17:38086400-38090000 Weak transcription Fetal Thymus thymus
38 chr17:38086400-38090000 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr17:38086400-38092000 Weak transcription K562 blood
40 chr17:38086400-38095600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr17:38086600-38087600 Weak transcription NH-A brain
42 chr17:38086600-38090000 Weak transcription Skeletal Muscle Male skeletal muscle
43 chr17:38086600-38090000 Weak transcription HepG2 liver
44 chr17:38086600-38092000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
45 chr17:38086600-38092000 Weak transcription Muscle Satellite Cultured Cells --
46 chr17:38086800-38095200 Weak transcription NHLF lung

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Last update: Aug 31, 2015