The 2.0 version of rSNPBase

Variant report

Variant rs2872516
Chromosome Location chr17:38072727-38072728
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38049200-38075400 Weak transcription Brain Cingulate Gyrus brain
2 chr17:38052600-38074200 Weak transcription Primary neutrophils fromperipheralblood blood
3 chr17:38055600-38077400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr17:38056800-38074600 Weak transcription NH-A brain
5 chr17:38057200-38074400 Weak transcription Skeletal Muscle Male skeletal muscle
6 chr17:38057400-38075400 Weak transcription HSMM muscle
7 chr17:38057600-38076600 Weak transcription iPS-18 Cell Line embryonic stem cell
8 chr17:38057800-38077600 Weak transcription Muscle Satellite Cultured Cells --
9 chr17:38058000-38074600 Weak transcription Left Ventricle heart
10 chr17:38058200-38076200 Weak transcription Fetal Lung lung
11 chr17:38058200-38077800 Weak transcription HUES64 Cell Line embryonic stem cell
12 chr17:38058400-38075400 Weak transcription H9 Cell Line embryonic stem cell
13 chr17:38058600-38075400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
14 chr17:38058600-38077400 Weak transcription Colon Smooth Muscle Colon
15 chr17:38059000-38082400 Weak transcription Psoas Muscle Psoas
16 chr17:38059200-38075400 Weak transcription Brain Hippocampus Middle brain
17 chr17:38059400-38074000 Weak transcription Small Intestine intestine
18 chr17:38059800-38077200 Weak transcription Esophagus oesophagus
19 chr17:38060000-38077400 Weak transcription Monocytes-CD14+_RO01746 blood
20 chr17:38060400-38081600 Weak transcription Fetal Brain Male brain
21 chr17:38060600-38073000 Weak transcription Primary hematopoietic stem cells blood
22 chr17:38060800-38075600 Strong transcription Primary T cells from cord blood blood
23 chr17:38061000-38072800 Weak transcription K562 blood
24 chr17:38061000-38074200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
25 chr17:38061200-38074000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
26 chr17:38061400-38075400 Weak transcription Right Ventricle heart
27 chr17:38061600-38074200 Strong transcription Fetal Thymus thymus
28 chr17:38061800-38081000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr17:38062200-38075200 Weak transcription Spleen Spleen
30 chr17:38062200-38075400 Weak transcription Primary hematopoietic stem cells short term culture blood
31 chr17:38062400-38075400 Weak transcription Dnd41 blood
32 chr17:38062800-38078200 Weak transcription ES-I3 Cell Line embryonic stem cell
33 chr17:38063600-38077000 Weak transcription Pancreas Pancrea
34 chr17:38063800-38074200 Weak transcription Cortex derived primary cultured neurospheres brain
35 chr17:38063800-38075400 Weak transcription NHEK skin
36 chr17:38064000-38075200 Weak transcription HUES6 Cell Line embryonic stem cell
37 chr17:38065000-38073400 Strong transcription Primary T helper cells fromperipheralblood blood
38 chr17:38065600-38075400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
39 chr17:38065800-38075400 Weak transcription NHLF lung
40 chr17:38066000-38073000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
41 chr17:38066000-38074200 Weak transcription Fetal Brain Female brain
42 chr17:38066200-38073000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr17:38066400-38074600 Weak transcription Primary B cells from peripheral blood blood
44 chr17:38066600-38075400 Weak transcription iPS-20b Cell Line embryonic stem cell
45 chr17:38066600-38078000 Weak transcription Fetal Heart heart
46 chr17:38066800-38074200 Weak transcription Primary T killer memory cells from peripheral blood blood
47 chr17:38066800-38076200 Weak transcription Placenta Amnion Placenta Amnion
48 chr17:38066800-38076600 Weak transcription HSMMtube muscle
49 chr17:38067000-38072800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr17:38067000-38073200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived

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Last update: Aug 31, 2015