The 2.0 version of rSNPBase

Variant report

Variant rs4065275
Chromosome Location chr17:38080865-38080866
allele A/G/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:38059000-38082400 Weak transcription Psoas Muscle Psoas
2 chr17:38060400-38081600 Weak transcription Fetal Brain Male brain
3 chr17:38061800-38081000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
4 chr17:38073800-38081200 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr17:38074200-38081000 Genic enhancers Fetal Thymus thymus
6 chr17:38074400-38082200 Genic enhancers Placenta Placenta
7 chr17:38074400-38082400 Weak transcription Hela-S3 cervix
8 chr17:38075000-38081200 Strong transcription Brain Germinal Matrix brain
9 chr17:38075000-38081400 Genic enhancers Fetal Intestine Large intestine
10 chr17:38075200-38081000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr17:38075400-38081000 Genic enhancers Primary T cells fromperipheralblood blood
12 chr17:38075400-38081000 Strong transcription Brain Cingulate Gyrus brain
13 chr17:38075600-38081200 Genic enhancers Primary T helper naive cells fromperipheralblood blood
14 chr17:38075600-38082200 Genic enhancers Fetal Intestine Small intestine
15 chr17:38076400-38081000 Strong transcription Sigmoid Colon Sigmoid Colon
16 chr17:38076600-38081000 Genic enhancers Primary B cells from cord blood blood
17 chr17:38076600-38082200 Genic enhancers Primary hematopoietic stem cells short term culture blood
18 chr17:38077200-38081000 Genic enhancers Primary T regulatory cells fromperipheralblood blood
19 chr17:38077200-38082800 Weak transcription Pancreatic Islets Pancreatic Islet
20 chr17:38077800-38081000 Strong transcription Fetal Adrenal Gland Adrenal Gland
21 chr17:38078400-38081000 Weak transcription Fetal Heart heart
22 chr17:38079400-38082200 Weak transcription HMEC breast
23 chr17:38079800-38081200 Genic enhancers Fetal Muscle Leg muscle
24 chr17:38079800-38081600 Genic enhancers Rectal Mucosa Donor 29 rectum
25 chr17:38079800-38082200 Genic enhancers Fetal Muscle Trunk muscle
26 chr17:38080000-38081400 Genic enhancers Thymus Thymus
27 chr17:38080000-38081600 Weak transcription Fetal Kidney kidney
28 chr17:38080000-38082600 Flanking Active TSS Liver Liver
29 chr17:38080000-38083000 Weak transcription Ovary ovary
30 chr17:38080200-38081400 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr17:38080200-38081400 Enhancers HUVEC blood vessel
32 chr17:38080200-38081600 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr17:38080200-38081600 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
34 chr17:38080200-38081600 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
35 chr17:38080200-38081600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
36 chr17:38080200-38081600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
37 chr17:38080200-38081600 Genic enhancers Esophagus oesophagus
38 chr17:38080200-38081600 Genic enhancers Pancreas Pancrea
39 chr17:38080200-38082400 Weak transcription Primary monocytes fromperipheralblood blood
40 chr17:38080200-38082400 Genic enhancers Fetal Stomach stomach
41 chr17:38080200-38082400 Enhancers NH-A brain
42 chr17:38080200-38082600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr17:38080200-38082800 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
44 chr17:38080400-38081000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr17:38080400-38081000 Genic enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
46 chr17:38080400-38081000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
47 chr17:38080400-38081000 Enhancers Primary T helper cells PMA-I stimulated --
48 chr17:38080400-38081200 Enhancers HUES64 Cell Line embryonic stem cell
49 chr17:38080400-38081200 Weak transcription Brain Inferior Temporal Lobe brain
50 chr17:38080400-38081200 Weak transcription K562 blood

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Last update: Aug 31, 2015