Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:38864416..38865216-chr19:50528212..50528914,2	Hela-S3	cervix:
2	chr17:38864332..38866503-chr17:38870662..38872459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105053	Chromatin interaction

rSNPs within LD-proxies of this variant (count:5)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38854000-38875800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr17:38860000-38864600	Weak transcription	Placenta	Placenta
3	chr17:38860000-38890200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:38861800-38864600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr17:38863600-38864600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr17:38863600-38865000	Enhancers	HUVEC	blood vessel
7	chr17:38863800-38864600	Bivalent Enhancer	HepG2	liver
8	chr17:38864000-38864600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr17:38864000-38864600	Enhancers	A549	lung
10	chr17:38864000-38864600	Enhancers	NHEK	skin
11	chr17:38864000-38864800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr17:38864000-38864800	Enhancers	Right Atrium	heart
13	chr17:38864000-38865000	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr17:38864000-38865200	Enhancers	Adipose Nuclei	Adipose
15	chr17:38864200-38864800	Flanking Active TSS	Hela-S3	cervix
16	chr17:38864200-38864800	Enhancers	HMEC	breast
17	chr17:38864200-38865000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr17:38864200-38865000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:38864200-38865000	Enhancers	Esophagus	oesophagus
20	chr17:38864400-38865000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:38864400-38865000	Enhancers	Lung	lung

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