Variant report

Variant	rs73293436
Chromosome Location	chr17:38723478-38723479
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12946603	0.89[EUR][1000 genomes]
rs28735874	0.89[EUR][1000 genomes]
rs60488918	0.89[EUR][1000 genomes]
rs71371440	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv574994	chr17:38719799-38824636	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38721800-38724800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:38722200-38723600	Enhancers	Primary B cells from cord blood	blood
3	chr17:38722600-38725800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:38722600-38725800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:38722600-38726600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr17:38722800-38724600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:38722800-38726400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr17:38722800-38726600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr17:38722800-38726600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr17:38722800-38726800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr17:38723000-38724400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr17:38723000-38724400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr17:38723000-38726600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr17:38723000-38738000	Weak transcription	Thymus	Thymus
15	chr17:38723200-38724400	Weak transcription	Primary T cells from cord blood	blood
16	chr17:38723400-38724400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr17:38723400-38724800	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links