Variant report

No.	Distal block	Cell Line	Cell type
1	chr17:38837218..38838803-chr17:38851877..38853465,2	MCF-7	breast:
2	chr17:38841265..38844888-chr17:38849405..38853092,5	MCF-7	breast:
3	chr17:38798051..38800892-chr17:38851970..38854604,2	MCF-7	breast:
4	chr17:38471695..38474566-chr17:38851182..38854092,2	MCF-7	breast:
5	chr17:38801632..38805923-chr17:38849683..38856183,10	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131759	Chromatin interaction
ENSG00000073584	Chromatin interaction

rSNPs within LD-proxies of this variant (count:7)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431626	chr17:38770965-38999722	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv908225	chr17:38776406-38868480	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38850000-38854000	Enhancers	Placenta	Placenta
2	chr17:38850800-38853200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr17:38851000-38854000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr17:38851600-38853000	Enhancers	Pancreas	Pancrea
5	chr17:38852000-38854600	Enhancers	Fetal Kidney	kidney
6	chr17:38852200-38853200	Enhancers	Fetal Intestine Large	intestine
7	chr17:38852200-38853200	Enhancers	Fetal Intestine Small	intestine
8	chr17:38852200-38853200	Enhancers	Gastric	stomach
9	chr17:38852200-38853200	Enhancers	Rectal Mucosa Donor 31	rectum
10	chr17:38852200-38853200	Flanking Active TSS	A549	lung
11	chr17:38852200-38854000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr17:38852200-38854000	Enhancers	Fetal Lung	lung
13	chr17:38852400-38853200	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr17:38852400-38853400	Flanking Active TSS	Liver	Liver
15	chr17:38852600-38852800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr17:38852600-38852800	Enhancers	HepG2	liver
17	chr17:38852600-38853000	Enhancers	Stomach Mucosa	stomach
18	chr17:38852600-38853800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr17:38852600-38853800	Enhancers	NHEK	skin
20	chr17:38852600-38854000	Enhancers	Hela-S3	cervix

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