Variant report

Variant	rs12979034
Chromosome Location	chr19:21153468-21153469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr19:21153393-21155054	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000268326	TF binding region

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10500214	0.83[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11085429	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs12052091	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs12151124	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12972502	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12973946	0.85[EUR][1000 genomes]
rs12974516	0.84[EUR][1000 genomes]
rs12976498	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12977377	0.84[EUR][1000 genomes]
rs12978422	0.84[EUR][1000 genomes]
rs12980702	0.83[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12985632	0.85[EUR][1000 genomes]
rs12985960	0.83[CEU][hapmap];1.00[YRI][hapmap]
rs1975056	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs34083865	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34147545	0.85[EUR][1000 genomes]
rs34319995	0.87[EUR][1000 genomes]
rs34353115	0.84[EUR][1000 genomes]
rs34364519	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34570925	0.85[EUR][1000 genomes]
rs34810042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35087386	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35142954	0.85[EUR][1000 genomes]
rs35301331	0.84[EUR][1000 genomes]
rs35355399	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35356210	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35629911	0.84[EUR][1000 genomes]
rs35646729	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35713135	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35748394	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35775609	0.83[EUR][1000 genomes]
rs35807371	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35816744	0.84[EUR][1000 genomes]
rs35891780	0.83[EUR][1000 genomes]
rs35908447	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35992021	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36066016	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66886362	0.85[EUR][1000 genomes]
rs66889224	0.84[EUR][1000 genomes]
rs67084493	0.85[EUR][1000 genomes]
rs67242454	0.84[EUR][1000 genomes]
rs67493653	0.87[EUR][1000 genomes]
rs68066643	0.84[EUR][1000 genomes]
rs68140009	0.84[EUR][1000 genomes]
rs7254676	0.84[EUR][1000 genomes]
rs73005097	0.84[EUR][1000 genomes]
rs73007025	0.84[EUR][1000 genomes]
rs73007030	0.84[EUR][1000 genomes]
rs73007042	0.84[EUR][1000 genomes]
rs74183002	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8100072	0.83[CEU][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8113635	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752729	chr19:20818886-21169554	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1063954	chr19:21000562-21177577	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	esv1850387	chr19:21109758-21294264	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
9	nsv1055484	chr19:21141787-21158134	Weak transcription ZNF genes & repeats Enhancers	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv515577	chr19:21152367-21164399	Enhancers Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21152400-21155000	Enhancers	Pancreas	Pancrea

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