Variant report

Variant	rs74183002
Chromosome Location	chr19:21106446-21106447
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10500214	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12151124	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12972502	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12973946	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12974516	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12976498	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12977377	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12978422	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12979034	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12980702	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12982799	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12984683	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12985632	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34083865	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34094278	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34147545	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34319995	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34333465	0.83[EUR][1000 genomes]
rs34353115	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34364519	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34408954	0.81[EUR][1000 genomes]
rs34428650	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34570925	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34589343	0.81[EUR][1000 genomes]
rs34624594	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34655445	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34810042	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35087386	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35142954	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35187472	0.81[EUR][1000 genomes]
rs35301331	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35355399	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35356210	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35629911	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35646729	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35713135	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35713726	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35739003	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35748394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35775609	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35807371	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35816744	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35891780	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35908447	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35992021	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs36066016	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36116339	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3853666	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3853667	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4583391	0.81[EUR][1000 genomes]
rs66746089	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66886362	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66889224	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67084493	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67143565	0.81[EUR][1000 genomes]
rs67242454	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67493653	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs68066643	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs68101689	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68140009	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7254676	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73005097	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73007025	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73007030	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73007042	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74182996	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74182998	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74182999	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8100072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8113635	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752729	chr19:20818886-21169554	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv1063954	chr19:21000562-21177577	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv578946	chr19:21014403-21151796	ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	esv3385528	chr19:21030777-21495566	Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
8	nsv960809	chr19:21031718-21121801	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1055738	chr19:21040181-21109969	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv522090	chr19:21041350-21109784	ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv578947	chr19:21041350-21109784	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv817536	chr19:21041855-21348237	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
13	nsv1062802	chr19:21053665-21109969	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1067455	chr19:21053665-21141787	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	nsv1058430	chr19:21063759-21114796	Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21105200-21106600	Active TSS	Primary T killer memory cells from peripheral blood	blood
2	chr19:21105600-21106800	Active TSS	Monocytes-CD14+_RO01746	blood
3	chr19:21105600-21107000	Active TSS	Cortex derived primary cultured neurospheres	brain
4	chr19:21105600-21107000	Active TSS	Brain Hippocampus Middle	brain
5	chr19:21105600-21107000	Active TSS	Fetal Brain Female	brain
6	chr19:21105600-21107000	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr19:21105600-21107000	Active TSS	GM12878-XiMat	blood
8	chr19:21105600-21107400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr19:21105600-21107400	Active TSS	Stomach Smooth Muscle	stomach
10	chr19:21105600-21107400	Active TSS	HUVEC	blood vessel
11	chr19:21105600-21108000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr19:21105800-21106800	Active TSS	Colonic Mucosa	Colon
13	chr19:21105800-21106800	Active TSS	Colon Smooth Muscle	Colon
14	chr19:21105800-21106800	Active TSS	Fetal Brain Male	brain
15	chr19:21105800-21106800	Active TSS	Fetal Muscle Trunk	muscle
16	chr19:21105800-21106800	Active TSS	Fetal Thymus	thymus
17	chr19:21105800-21106800	Active TSS	Skeletal Muscle Female	skeletal muscle
18	chr19:21105800-21107000	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr19:21105800-21107000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr19:21105800-21107000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr19:21105800-21107000	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr19:21105800-21107000	Active TSS	Primary hematopoietic stem cells	blood
23	chr19:21105800-21107000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr19:21105800-21107000	Active TSS	Adipose Nuclei	Adipose
25	chr19:21105800-21107000	Active TSS	Brain Anterior Caudate	brain
26	chr19:21105800-21107000	Active TSS	Brain Cingulate Gyrus	brain
27	chr19:21105800-21107000	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr19:21105800-21107000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
29	chr19:21105800-21107000	Active TSS	Brain Substantia Nigra	brain
30	chr19:21105800-21107000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
31	chr19:21105800-21107000	Active TSS	Fetal Intestine Large	intestine
32	chr19:21105800-21107000	Active TSS	Fetal Intestine Small	intestine
33	chr19:21105800-21107000	Active TSS	Pancreas	Pancrea
34	chr19:21105800-21107000	Active TSS	Rectal Mucosa Donor 31	rectum
35	chr19:21105800-21107000	Active TSS	Rectal Smooth Muscle	rectum
36	chr19:21105800-21107000	Active TSS	Thymus	Thymus
37	chr19:21105800-21107000	Active TSS	HepG2	liver
38	chr19:21105800-21107000	Active TSS	HSMM	muscle
39	chr19:21105800-21107000	Active TSS	Osteobl	bone
40	chr19:21105800-21107200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr19:21105800-21107200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr19:21105800-21107200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr19:21105800-21107200	Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr19:21105800-21107200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:21105800-21107200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr19:21105800-21107200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr19:21105800-21107200	Active TSS	Brain Angular Gyrus	brain
48	chr19:21105800-21107200	Active TSS	Brain Germinal Matrix	brain
49	chr19:21105800-21107200	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr19:21105800-21107200	Active TSS	Pancreatic Islets	Pancreatic Islet

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