Variant report

Variant	rs34624594
Chromosome Location	chr19:21008430-21008431
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10500214	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12972502	0.83[EUR][1000 genomes]
rs12972757	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12973946	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12974516	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12976498	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12977377	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12978422	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12980702	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12982799	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12982946	0.86[EUR][1000 genomes]
rs12983625	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12984683	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12984979	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12985632	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12985960	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34044414	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34083865	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34094278	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34147545	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34215623	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34319995	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34333465	0.94[EUR][1000 genomes]
rs34353115	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34364519	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34408954	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34420848	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34428650	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34570925	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34589343	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34655445	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34677147	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34715629	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34883359	0.86[EUR][1000 genomes]
rs35087386	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35142954	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35187472	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35301331	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35355399	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35356210	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35360342	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35410563	0.86[EUR][1000 genomes]
rs35431492	0.83[AMR][1000 genomes]
rs35629911	0.88[EUR][1000 genomes]
rs35713135	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35713726	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35739003	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35739216	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35748394	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35775609	0.89[EUR][1000 genomes]
rs35816744	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35891780	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36066016	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs36116339	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3853666	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3853667	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4583391	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66746089	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66886362	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66889224	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67048847	0.83[AMR][1000 genomes]
rs67084493	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs67143565	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67242454	0.88[EUR][1000 genomes]
rs67493653	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs68066643	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs68101689	0.81[EUR][1000 genomes]
rs68140009	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7254676	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73005097	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73007025	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73007030	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73007042	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs74182991	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs74182996	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74182998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74182999	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs74183002	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8100072	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8113635	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9749521	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911325	chr19:20151257-21071548	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
2	esv3447275	chr19:20818886-21030779	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv2752729	chr19:20818886-21169554	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
5	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv3338155	chr19:20845947-21015656	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	esv3319109	chr19:20845947-21015695	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	esv3319110	chr19:20845947-21015695	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1056154	chr19:20845947-21021053	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv543940	chr19:20845947-21021053	Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
12	nsv1067170	chr19:20845947-21041038	Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
13	nsv458512	chr19:20845947-21041350	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv578926	chr19:20845947-21041350	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv578935	chr19:20845947-21048883	Strong transcription ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv578936	chr19:20845947-21049204	Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv1064103	chr19:20845947-21062996	ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
18	nsv578942	chr19:20899284-21049204	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv1067085	chr19:20912304-21008838	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
20	nsv1064657	chr19:20926564-21008838	Weak transcription Active TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
21	nsv578944	chr19:20946275-21048883	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
22	nsv578945	chr19:20980958-21041350	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv1063954	chr19:21000562-21177577	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:21006800-21008600	ZNF genes & repeats	Fetal Lung	lung
2	chr19:21006800-21009200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
3	chr19:21006800-21009200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr19:21006800-21009200	ZNF genes & repeats	Primary B cells from cord blood	blood
5	chr19:21006800-21009200	ZNF genes & repeats	Ovary	ovary
6	chr19:21006800-21009200	ZNF genes & repeats	Dnd41	blood
7	chr19:21006800-21009400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:21006800-21009600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr19:21006800-21011200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr19:21007000-21009000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr19:21007000-21009200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr19:21007000-21009200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr19:21007000-21009200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
14	chr19:21007000-21009200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr19:21007000-21009400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:21007200-21009000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
17	chr19:21007200-21009200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr19:21007200-21009200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr19:21007200-21009400	ZNF genes & repeats	Primary T cells from cord blood	blood
20	chr19:21007200-21009400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
21	chr19:21007400-21009200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr19:21007800-21009200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
23	chr19:21008200-21009200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr19:21008400-21008800	Weak transcription	Left Ventricle	heart
25	chr19:21008400-21009000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr19:21008400-21009200	ZNF genes & repeats	Liver	Liver
27	chr19:21008400-21009400	ZNF genes & repeats	Adipose Nuclei	Adipose

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