Variant report

Variant	rs34094278
Chromosome Location	chr12:105640577-105640578
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:105605767..105607700-chr12:105638996..105640802,2	MCF-7	breast:
2	chr12:105627501..105631320-chr12:105637092..105641109,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136044	Chromatin interaction
ENSG00000235162	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10500214	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12972502	0.83[EUR][1000 genomes]
rs12972757	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12973946	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12974516	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12976498	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12977377	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12978422	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12980702	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12982799	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12982946	0.83[EUR][1000 genomes]
rs12983625	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12984683	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12984979	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12985632	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12985960	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34044414	0.83[AMR][1000 genomes]
rs34083865	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34147545	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34215623	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34319995	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34333465	0.91[EUR][1000 genomes]
rs34353115	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34364519	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34408954	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34420848	0.83[AMR][1000 genomes]
rs34428650	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34570925	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34589343	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34624594	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34655445	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34677147	0.83[AMR][1000 genomes]
rs34715629	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34883359	0.83[EUR][1000 genomes]
rs35087386	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35142954	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35187472	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35301331	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35355399	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35356210	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35360342	0.83[AMR][1000 genomes]
rs35410563	0.83[EUR][1000 genomes]
rs35431492	0.83[AMR][1000 genomes]
rs35629911	0.89[EUR][1000 genomes]
rs35713135	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35713726	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35739003	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35739216	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35748394	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35775609	0.90[EUR][1000 genomes]
rs35807371	0.83[AMR][1000 genomes]
rs35816744	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35891780	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35908447	0.83[AMR][1000 genomes]
rs35992021	0.83[AMR][1000 genomes]
rs36066016	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs36116339	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3853666	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3853667	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4583391	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66746089	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs66886362	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs66889224	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67048847	0.83[AMR][1000 genomes]
rs67084493	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67143565	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67242454	0.89[EUR][1000 genomes]
rs67493653	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs68066643	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs68101689	0.81[EUR][1000 genomes]
rs68140009	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7254676	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73005097	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73007025	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73007030	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73007042	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs74182991	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs74182996	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs74182998	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs74182999	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74183002	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8100072	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8113635	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9749521	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv455704	chr12:105583877-105651356	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
2	nsv560053	chr12:105583877-105651356	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
3	nsv899499	chr12:105616297-105722529	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	esv3429738	chr12:105638759-105642036	Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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