Variant report

Variant	rs12983625
Chromosome Location	chr19:20967584-20967585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:20957022..20960457-chr19:20966415..20968798,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF626-3	chr19:20967402-20967958	NONHSAT063672

Variant related genes	Relation type
ENSG00000160229	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs12972757	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12973946	0.83[AMR][1000 genomes]
rs12974516	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12977377	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12978422	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12982799	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12982946	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12984683	0.86[EUR][1000 genomes]
rs12984979	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12985632	0.83[AMR][1000 genomes]
rs12985960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34044414	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34094278	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34147545	0.83[AMR][1000 genomes]
rs34215623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34319995	0.83[AMR][1000 genomes]
rs34333465	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34353115	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34408954	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34420848	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34428650	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34570925	0.83[AMR][1000 genomes]
rs34589343	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34624594	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34655445	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34677147	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs34715629	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34776862	0.81[EUR][1000 genomes]
rs34883359	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35142954	0.83[AMR][1000 genomes]
rs35187472	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35301331	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35360342	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs35410563	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35431492	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs35629911	0.81[EUR][1000 genomes]
rs35713726	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35739003	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35739216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35775609	0.82[EUR][1000 genomes]
rs35816744	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35891780	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36116339	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3853666	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3853667	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4583391	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66746089	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs66886362	0.83[AMR][1000 genomes]
rs66889224	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67048847	0.94[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs67084493	0.83[AMR][1000 genomes]
rs67143565	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67242454	0.81[EUR][1000 genomes]
rs68066643	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68140009	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7254676	0.83[AMR][1000 genomes]
rs73005097	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73007025	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73007030	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73007042	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs74182991	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74182996	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs74182998	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74182999	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9749521	0.94[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:85 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911325	chr19:20151257-21071548	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	49 gene(s)	inside rSNPs	diseases
2	nsv530804	chr19:20574295-21001349	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
3	nsv1065039	chr19:20818886-20977326	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2751781	chr19:20818886-20985425	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv578921	chr19:20818886-20985425	ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv458510	chr19:20818886-20987550	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv578910	chr19:20818886-20987550	Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv578917	chr19:20818886-20989873	Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv578918	chr19:20818886-21008212	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
10	esv3447275	chr19:20818886-21030779	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	esv2752729	chr19:20818886-21169554	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
12	nsv1062776	chr19:20818886-21273361	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
13	nsv932110	chr19:20818886-21278952	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
14	esv2763043	chr19:20818886-21290543	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
15	nsv1056879	chr19:20845947-20973432	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv1058458	chr19:20845947-20975268	Weak transcription ZNF genes & repeats Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1067183	chr19:20845947-20975268	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
18	nsv1055911	chr19:20845947-20977326	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
19	nsv1059582	chr19:20845947-20977326	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
20	nsv1064916	chr19:20845947-20977326	Weak transcription Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
21	nsv1065495	chr19:20845947-20977326	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv1067256	chr19:20845947-20980301	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
23	esv2830042	chr19:20845947-20980958	Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
24	nsv458513	chr19:20845947-20980958	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv578929	chr19:20845947-20980958	Active TSS Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
26	nsv1063556	chr19:20845947-20981129	ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv1065960	chr19:20845947-20981129	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv578930	chr19:20845947-20982627	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
29	esv2751782	chr19:20845947-20985460	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
30	nsv1066747	chr19:20845947-20985924	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
31	nsv1060429	chr19:20845947-20986303	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
32	nsv1060579	chr19:20845947-20986303	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
33	nsv1061028	chr19:20845947-20986303	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
34	nsv1061596	chr19:20845947-20986303	Active TSS Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
35	nsv1062051	chr19:20845947-20986303	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
36	nsv1063760	chr19:20845947-20986303	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
37	nsv1066131	chr19:20845947-20986303	Strong transcription Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
38	esv3693420	chr19:20845947-20987550	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
39	nsv517256	chr19:20845947-20987550	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
40	nsv458514	chr19:20845947-20987550	Active TSS ZNF genes & repeats Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
41	nsv458515	chr19:20845947-20987550	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
42	nsv458516	chr19:20845947-20987550	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
43	nsv458517	chr19:20845947-20987550	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
44	nsv458519	chr19:20845947-20987550	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
45	nsv458520	chr19:20845947-20987550	Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
46	nsv458521	chr19:20845947-20987550	ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
47	nsv458522	chr19:20845947-20987550	Bivalent Enhancer ZNF genes & repeats Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
48	nsv458523	chr19:20845947-20987550	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
49	nsv578923	chr19:20845947-20987550	Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
50	nsv578931	chr19:20845947-20987550	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:20959600-20978200	Weak transcription	Spleen	Spleen
2	chr19:20959800-20967600	Weak transcription	Left Ventricle	heart
3	chr19:20959800-20967800	Weak transcription	Aorta	Aorta
4	chr19:20959800-20970400	Weak transcription	Gastric	stomach
5	chr19:20959800-20978400	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr19:20960000-20967600	Weak transcription	Adipose Nuclei	Adipose
7	chr19:20960000-20968000	Weak transcription	Colonic Mucosa	Colon
8	chr19:20960000-20975600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr19:20960000-20976200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr19:20960000-20976600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr19:20960000-20977600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr19:20960000-20977600	Weak transcription	Brain Hippocampus Middle	brain
13	chr19:20960000-20978000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr19:20960000-20978200	Weak transcription	Pancreas	Pancrea
15	chr19:20960000-20978400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr19:20960000-20978400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr19:20960000-20978400	Weak transcription	HSMM	muscle
18	chr19:20960000-20983800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr19:20960000-20987600	Weak transcription	Brain Substantia Nigra	brain
20	chr19:20960000-20987800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr19:20960200-20967600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr19:20960200-20967800	Weak transcription	HepG2	liver
23	chr19:20960200-20968200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr19:20960200-20979600	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr19:20960200-20979600	Weak transcription	NH-A	brain
26	chr19:20960200-20987200	Weak transcription	Colon Smooth Muscle	Colon
27	chr19:20960200-20990400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr19:20960800-20976600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr19:20961000-20973600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
30	chr19:20961200-20989600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr19:20962400-20978400	Weak transcription	Osteobl	bone
32	chr19:20963000-20969600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
33	chr19:20964000-20967600	Weak transcription	HMEC	breast
34	chr19:20964000-20969000	Weak transcription	Fetal Brain Male	brain
35	chr19:20964000-20970200	Weak transcription	Ovary	ovary
36	chr19:20964000-20975600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr19:20964400-20967800	Weak transcription	Small Intestine	intestine
38	chr19:20964600-20967800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr19:20965000-20967600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr19:20965000-20967600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr19:20965000-20967800	Weak transcription	Fetal Thymus	thymus
42	chr19:20965000-20967800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr19:20965000-20975400	ZNF genes & repeats	Dnd41	blood
44	chr19:20965200-20967800	Weak transcription	Fetal Stomach	stomach
45	chr19:20966000-20970600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
46	chr19:20966400-20967600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr19:20966400-20967800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr19:20966400-20968200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr19:20966400-20968400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr19:20966400-20968600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links