The 2.0 version of rSNPBase

Variant report

Variant rs12980839
Chromosome Location chr19:41820213-41820214
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:126 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41817000-41821600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr19:41817000-41822200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr19:41817000-41827800 Weak transcription ES-WA7 Cell Line embryonic stem cell
4 chr19:41817200-41827200 Weak transcription Right Atrium heart
5 chr19:41817400-41821800 Weak transcription iPS-18 Cell Line embryonic stem cell
6 chr19:41817400-41822000 Weak transcription H1 Cell Line embryonic stem cell
7 chr19:41817400-41822000 Weak transcription H9 Cell Line embryonic stem cell
8 chr19:41817400-41822000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr19:41817400-41822000 Weak transcription Ovary ovary
10 chr19:41817400-41822200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
11 chr19:41817400-41822400 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr19:41817400-41825200 Weak transcription Stomach Mucosa stomach
13 chr19:41817600-41822000 Weak transcription Psoas Muscle Psoas
14 chr19:41817600-41827600 Strong transcription Fetal Stomach stomach
15 chr19:41817800-41822200 Weak transcription Fetal Heart heart
16 chr19:41817800-41822600 Weak transcription NHDF-Ad bronchial
17 chr19:41817800-41827000 Strong transcription Fetal Muscle Leg muscle
18 chr19:41817800-41827200 Weak transcription ES-I3 Cell Line embryonic stem cell
19 chr19:41817800-41828800 Strong transcription Fetal Intestine Small intestine
20 chr19:41817800-41829200 Weak transcription Fetal Brain Male brain
21 chr19:41818000-41820600 Strong transcription NHEK skin
22 chr19:41818000-41825400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr19:41818000-41827200 Strong transcription Cortex derived primary cultured neurospheres brain
24 chr19:41818000-41828800 Weak transcription Hela-S3 cervix
25 chr19:41818000-41829000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr19:41818200-41820800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr19:41818200-41820800 Strong transcription HUVEC blood vessel
28 chr19:41818200-41822400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
29 chr19:41818200-41824600 Strong transcription Spleen Spleen
30 chr19:41818200-41825600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr19:41818200-41825800 Strong transcription HUES6 Cell Line embryonic stem cell
32 chr19:41818200-41825800 Strong transcription A549 lung
33 chr19:41818200-41826800 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr19:41818200-41826800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
35 chr19:41818200-41827200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr19:41818200-41827200 Strong transcription Sigmoid Colon Sigmoid Colon
37 chr19:41818200-41827400 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr19:41818200-41827400 Strong transcription Osteobl bone
39 chr19:41818200-41827600 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr19:41818200-41828400 Strong transcription Rectal Mucosa Donor 29 rectum
41 chr19:41818200-41831600 Strong transcription Primary mononuclear cells fromperipheralblood Blood
42 chr19:41818400-41820600 Strong transcription Duodenum Mucosa Duodenum
43 chr19:41818400-41820600 Strong transcription Fetal Lung lung
44 chr19:41818400-41820600 Strong transcription NHLF lung
45 chr19:41818400-41820800 Strong transcription Muscle Satellite Cultured Cells --
46 chr19:41818400-41820800 Strong transcription Brain Hippocampus Middle brain
47 chr19:41818400-41820800 Strong transcription Placenta Amnion Placenta Amnion
48 chr19:41818400-41821000 Strong transcription Colon Smooth Muscle Colon
49 chr19:41818400-41822200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
50 chr19:41818400-41822600 Strong transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015