The 2.0 version of rSNPBase

Variant report

Variant rs12980298
Chromosome Location chr19:41832129-41832130
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41818600-41854800 Strong transcription Dnd41 blood
2 chr19:41823400-41832200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr19:41824400-41834000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
4 chr19:41827000-41832800 Genic enhancers Primary T cells fromperipheralblood blood
5 chr19:41827400-41833000 Enhancers Primary hematopoietic stem cells blood
6 chr19:41827400-41833000 Genic enhancers Fetal Thymus thymus
7 chr19:41827800-41832200 Enhancers Stomach Mucosa stomach
8 chr19:41828400-41832200 Enhancers Liver Liver
9 chr19:41828600-41832200 Enhancers Primary B cells from cord blood blood
10 chr19:41828600-41834000 Enhancers Placenta Amnion Placenta Amnion
11 chr19:41828800-41832400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
12 chr19:41828800-41834000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr19:41828800-41834400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
14 chr19:41829200-41832200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
15 chr19:41829200-41835400 Flanking Active TSS Monocytes-CD14+_RO01746 blood
16 chr19:41829600-41832200 Weak transcription Hela-S3 cervix
17 chr19:41829600-41833000 Enhancers Primary monocytes fromperipheralblood blood
18 chr19:41829800-41832200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
19 chr19:41830000-41832200 Enhancers GM12878-XiMat blood
20 chr19:41830000-41832600 Flanking Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
21 chr19:41830000-41833000 Enhancers Primary T killer naive cells fromperipheralblood blood
22 chr19:41830000-41833400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr19:41830200-41832400 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr19:41830200-41833200 Enhancers HMEC breast
25 chr19:41830400-41832400 Flanking Active TSS Skeletal Muscle Male skeletal muscle
26 chr19:41830400-41832400 Weak transcription NHEK skin
27 chr19:41830400-41834000 Enhancers Fetal Lung lung
28 chr19:41830600-41832400 Flanking Active TSS NH-A brain
29 chr19:41830600-41832600 Flanking Active TSS Stomach Smooth Muscle stomach
30 chr19:41830600-41833000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
31 chr19:41830800-41832200 Weak transcription ES-WA7 Cell Line embryonic stem cell
32 chr19:41830800-41832200 Bivalent Enhancer Fetal Brain Male brain
33 chr19:41830800-41832600 Flanking Active TSS Duodenum Smooth Muscle Duodenum
34 chr19:41830800-41834600 Flanking Active TSS Skeletal Muscle Female skeletal muscle
35 chr19:41830800-41835000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr19:41831000-41832200 Enhancers Small Intestine intestine
37 chr19:41831200-41832200 Flanking Active TSS Left Ventricle heart
38 chr19:41831200-41832200 Flanking Active TSS Right Ventricle heart
39 chr19:41831200-41832200 Flanking Active TSS HSMM muscle
40 chr19:41831200-41832200 Flanking Active TSS NHLF lung
41 chr19:41831200-41832400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr19:41831200-41832400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
43 chr19:41831200-41832400 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
44 chr19:41831200-41832400 Flanking Active TSS Brain Dorsolateral Prefrontal Cortex brain
45 chr19:41831200-41832400 Flanking Active TSS Pancreas Pancrea
46 chr19:41831200-41833000 Flanking Active TSS Muscle Satellite Cultured Cells --
47 chr19:41831200-41833000 Weak transcription Thymus Thymus
48 chr19:41831400-41832200 Active TSS Brain Cingulate Gyrus brain
49 chr19:41831400-41832200 Weak transcription Fetal Kidney kidney
50 chr19:41831400-41832200 Flanking Bivalent TSS/Enh Fetal Stomach stomach

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Last update: Aug 31, 2015